Description Usage Arguments Value References Examples
View source: R/getMinorMajorCopyNumbers.R
Get minor and major copy number labels from region annotation labels
1 | getMinorMajorCopyNumbers(region)
|
region |
A character value, the annotation label for a copy number
region. Should be encoded as
|
A matrix
with length(region)
rows and two columns:
C1
and C2
, as described above.
Bengtsson H., Neuvial, P. and Speed, T. P. (2010) TumorBoost: normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays. BMC bioinformatics 11 (2010), p. 245.
Neuvial, P., Bengtsson H., and Speed, T. P. (2011) Statistical analysis of Single Nucleotide Polymorphism microarrays in cancer studies. Chapter 11 in *Handbook of Statistical Bioinformatics*, Springer.
1 2 3 | dat <- loadCnRegionData(dataSet="GSE29172_H1395", tumorFraction=1)
regions <- unique(dat$region)
getMinorMajorCopyNumbers(regions)
|
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