Files in mpierrejean/acnr
Annotated Copy-Number Regions
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md
R/extdata.R
R/getMinorMajorCopyNumbers.R
R/listDataSets.R
R/listTumorFractions.R
R/loadCnRegionData.R
R/loadDataSet.R
README.md
appveyor.yml
inst/extdata/GSE11976_CRL2324.rds
inst/extdata/GSE13372_HCC1143.rds
inst/extdata/GSE29172_H1395.rds
inst/preprocessing/GSE11976/00.PrepareData.R
inst/preprocessing/GSE11976/01.defineCopyNumberSegments.R
inst/preprocessing/GSE11976/02.exportRegionData.R
inst/preprocessing/GSE11976/03.mergeCnRegionData.R
inst/preprocessing/GSE11976/03.plotRegions.R
inst/preprocessing/GSE13372/00.install.R
inst/preprocessing/GSE13372/01.checkAnnotationData.R
inst/preprocessing/GSE13372/01.downloadAnnotationData.R
inst/preprocessing/GSE13372/02.downloadRawData.R
inst/preprocessing/GSE13372/03.doASCRMAv2.R
inst/preprocessing/GSE13372/04.writeWholeGenomeData.R
inst/preprocessing/GSE13372/05.defineCopyNumberSegments.R
inst/preprocessing/GSE13372/06.exportRegionData.R
inst/preprocessing/GSE13372/07.mergeCnRegionData.R
inst/preprocessing/GSE29172/00.install.R
inst/preprocessing/GSE29172/01.checkAnnotationData.R
inst/preprocessing/GSE29172/02.doASCRMAv2.R
inst/preprocessing/GSE29172/03.writeWholeGenomeData.R
inst/preprocessing/GSE29172/04.plotTracks.R
inst/preprocessing/GSE29172/05.defineCopyNumberSegments.R
inst/preprocessing/GSE29172/06.plotCopyNumberSegments.R
inst/preprocessing/GSE29172/07.exportRegionData.R
inst/preprocessing/GSE29172/08.mergeCnRegionData.R
inst/preprocessing/GSE29172/09.LightCnRegionData.R
man/GSE11976_CRL2324.Rd
man/GSE13372_HCC1143.Rd
man/GSE29172_H1395.Rd
man/acnr-package.Rd
man/getMinorMajorCopyNumbers.Rd
man/listDataSets.Rd
man/listTumorFractions.Rd
man/loadCnRegionData.Rd
tests/testthat.R
tests/testthat/test_dataSetConsistency.R
tests/testthat/test_germlineGenotypes.R
tests/testthat/test_monotonicCopyNumbers.R
tests/testthat/test_tumorFractions.R
vignettes/AutocorrelationVignette.Rmd
vignettes/acnr.Rmd
