library("knitr") opts_chunk$set( dev='png', fig.width=5, fig.height=5 )
This vignette describes the annotated data sets contained in the acnr
package.
library("acnr")
tf <- 1 dataSets <- listDataSets() regList <- lapply(dataSets, FUN=function(ds) { regDat <- loadCnRegionData(dataSet=ds, tumorFraction=tf) regs <- regDat[["region"]] }) names(regList) <- dataSets allregs <- unique(unlist(regList)) tab <- sapply(allregs, FUN=function(reg) { sapply(regList, FUN=function(rr) sum(rr==reg)) }) cap <- paste("Size of annotated copy-number regions for each of the", length(dataSets), "data sets.") if (require(xtable)) { print(xtable(tab, caption=cap, label="tab:regData", table.placement="!h", caption.placement="bottom")) }
sessionInfo()
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