Man pages for mqzhanglab/BSDE
Barycenter Single-Cell Differential Expression for Case-Control Studies
| BSDE | Calculate the BSDE p-value for a SingleCellExperiment object. |
| calc_multimod_param | For a given mixture 0.5 ZINB(mu(1-t), theta, z) + 0.5... |
| calc_zinb_param | Given a ZINB(mu, theta, z), returns ZINB(mu', theta', z) such... |
| cal_w2_bulk_pval | Calculate p-value for a given gene based on bulk RNAseq. The... |
| cal_w2_pval | This function calculates the BSDE Barycenter p-value of a... |
| de.dp | indicator vector (1 for differential expression in... |
| de.mean | indicator vector (1 for differential expression in mean) |
| de.mult | indicator vector (1 for differential expression in... |
| de.var | indicator vector (1 for differential expression in variance) |
| meta | Meta information |
| sce | 'SingleCellExperiment::SingleCellExperiment' object |
| sim_matrix | count data (row: gene, column: cell) |
| sim_matrix_bulk | matrix for bulk RNA data (gene x individual) |
| simu_base_param | Given parameters of a reference dataset, calculate the ZINB... |
