Files in mrc-ide/global-lmic-meffs

Analysis of LMIC COVID-19 Meffs

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

LICENCE

NAMESPACE

R/data_incoming.R R/out_helpers.R R/reports.R README.Rmd README.md analysis/00_cleaning_data_prep/prepping_shapefile_for_plots.R analysis/01_epidemic_tracectories_and_counterfactuals/1_Figure_1_BRT_Plots.R analysis/01_epidemic_tracectories_and_counterfactuals/2_Figure_1_lllustrative_Meff_Plots.R analysis/01_epidemic_tracectories_and_counterfactuals/3_Figure_1_Meff_Meff_pl_Comparisons.R analysis/01_epidemic_tracectories_and_counterfactuals/4_Figure_1_Meff_Meff_pl_Illustrative_Relationship.R analysis/01_epidemic_tracectories_and_counterfactuals/5_Figure_1_Rt_Plots.R analysis/01_epidemic_tracectories_and_counterfactuals/6_Figure_1_3_4_Param_Comparisons.R analysis/01_epidemic_tracectories_and_counterfactuals/Figure_1_BRT_Plots.R analysis/01_epidemic_tracectories_and_counterfactuals/Figure_2_Country_Trajectory_Comparisons.R analysis/01_epidemic_tracectories_and_counterfactuals/LatAm_R0_Inference_and_Model_Running.R analysis/01_epidemic_tracectories_and_counterfactuals/New_Figure_2_Uncoupling_Results.R analysis/01_epidemic_tracectories_and_counterfactuals/figure_1_all_panels.R analysis/01_epidemic_tracectories_and_counterfactuals/functions.R analysis/01_epidemic_tracectories_and_counterfactuals/meff_playing.R analysis/01_epidemic_tracectories_and_counterfactuals/new_figure_1.R

analysis/01_epidemic_tracectories_and_counterfactuals/temp_figures/Figure_1.ai

analysis/01_epidemic_tracectories_and_counterfactuals/temp_figures/Figure_1B_1C.pdf analysis/01_epidemic_tracectories_and_counterfactuals/temp_figures/Figure_1D_1E.pdf analysis/01_epidemic_tracectories_and_counterfactuals/temp_figures/Figure_1G.pdf analysis/01_epidemic_tracectories_and_counterfactuals/temp_figures/Rplot.pdf analysis/01_epidemic_tracectories_and_counterfactuals/temp_figures/Rplot01u.pdf analysis/01_epidemic_tracectories_and_counterfactuals/temp_figures/Rplot02.pdf analysis/02_meff_transmissibility/02_basic_pca_kmeans.R analysis/02_meff_transmissibility/kmeans_PCA_update.R analysis/03_meff_pl/quick_look_at_meffs.R

analysis/data/intervention_data/lockdown_timing_ACAPs_derived.csv

analysis/data/map_plot_data/start_R0_Meff_date.csv

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200615-153258-f61bac04/World_Bank_Country_Metadata.csv

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200615-153258-f61bac04/acaps.xlsx

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200615-153258-f61bac04/google_brt.rds

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200615-153258-f61bac04/google_brt_model.rds

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200615-153258-f61bac04/orderly.log

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200615-153258-f61bac04/orderly.yml

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200615-153258-f61bac04/orderly_run.rds

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200615-153258-f61bac04/overall.rds

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200615-153258-f61bac04/script.R

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200617-160036-65113018/World_Bank_Country_Metadata.csv

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200617-160036-65113018/acaps.xlsx

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200617-160036-65113018/google_brt.rds

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200617-160036-65113018/google_brt_model.rds

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200617-160036-65113018/orderly.log

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analysis/data/raw_data/server_results/archive/brt_google_mobility/20200617-160036-65113018/overall.rds

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200617-160036-65113018/script.R

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200627-230227-ebc43197/World_Bank_Country_Metadata.csv

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200627-230227-ebc43197/acaps.xlsx

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200627-230227-ebc43197/google_brt.rds

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analysis/data/raw_data/server_results/archive/brt_google_mobility/20200627-230227-ebc43197/script.R

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200704-214210-3f187617/World_Bank_Country_Metadata.csv

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200704-214210-3f187617/acaps.xlsx

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200704-214210-3f187617/google_brt.rds

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analysis/data/raw_data/server_results/archive/brt_google_mobility/20200706-182844-89016c9f/World_Bank_Country_Metadata.csv

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200706-182844-89016c9f/acaps.xlsx

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analysis/data/raw_data/server_results/archive/brt_google_mobility/20200706-182844-89016c9f/script.R

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200707-044810-bf0c0e2b/World_Bank_Country_Metadata.csv

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200707-044810-bf0c0e2b/acaps.xlsx

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200707-044810-bf0c0e2b/google_brt.rds

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analysis/data/raw_data/server_results/archive/brt_google_mobility/20200707-160247-0db1d9be/World_Bank_Country_Metadata.csv

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analysis/data/raw_data/server_results/archive/brt_google_mobility/20200707-212939-edf9a3ef/World_Bank_Country_Metadata.csv

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200707-212939-edf9a3ef/acaps.xlsx

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analysis/data/raw_data/server_results/archive/brt_google_mobility/20200708-015344-a90d3658/World_Bank_Country_Metadata.csv

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200708-015344-a90d3658/acaps.xlsx

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200708-015344-a90d3658/google_brt.rds

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analysis/data/raw_data/server_results/archive/brt_google_mobility/20200708-072104-953f1422/World_Bank_Country_Metadata.csv

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200708-072104-953f1422/acaps.xlsx

analysis/data/raw_data/server_results/archive/brt_google_mobility/20200708-072104-953f1422/google_brt.rds

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analysis/data/raw_data/server_results/archive/brt_google_mobility/20200708-224520-56a2c4b0/acaps.xlsx

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analysis/data_overview.md

globallmicmeffs.Rproj

mrc-ide/global-lmic-meffs documentation built on July 24, 2020, 12:30 a.m.