Files in mrc-ide/malariasimulation

An individual based model for malaria

LICENSE.md NEWS.md R/RcppExports.R R/antimalarial_resistance.R R/biting_process.R R/catch-routine-registration.R R/compartmental.R R/compatibility.R R/competing_hazards.R R/correlation.R R/data.R R/disease_progression.R R/drug_parameters.R R/events.R R/human_infection.R R/lag.R R/malariasimulation-package.R R/mda_parameters.R R/mda_processes.R R/mixing.R R/model.R R/mortality_processes.R R/mosquito_biology.R R/output_parameters.R R/parameters.R R/pev.R R/pev_parameters.R R/pmc.R R/population_parameters.R R/processes.R R/progress.R R/render.R R/tbv.R R/tbv_parameters.R R/utils.R R/variables.R R/vector_control.R R/vector_control_parameters.R R/vector_parameters.R README.md data-raw/parameter_draws.R man/AL_params.Rd man/CorrelationParameters.Rd man/DHA_PQP_params.Rd man/SP_AQ_params.Rd man/arab_params.Rd man/calculate_carrying_capacity.Rd man/create_pev_profile.Rd man/create_progress_process.Rd man/find_birthrates.Rd man/fun_params.Rd man/gamb_params.Rd man/get_antimalarial_resistance_parameters.Rd man/get_correlation_parameters.Rd man/get_init_carrying_capacity.Rd man/get_parameters.Rd man/parameter_draws.Rd man/parameterise_mosquito_equilibrium.Rd man/parameterise_total_M.Rd man/peak_season_offset.Rd man/r21_booster_profile.Rd man/r21_profile.Rd man/rtss_booster_profile.Rd man/rtss_profile.Rd man/run_metapop_simulation.Rd man/run_resumable_simulation.Rd man/run_simulation.Rd man/run_simulation_with_repetitions.Rd man/set_antimalarial_resistance.Rd man/set_bednets.Rd man/set_carrying_capacity.Rd man/set_clinical_treatment.Rd man/set_demography.Rd man/set_drugs.Rd man/set_epi_outputs.Rd man/set_equilibrium.Rd man/set_mass_pev.Rd man/set_mda.Rd man/set_parameter_draw.Rd man/set_pev_epi.Rd man/set_pmc.Rd man/set_smc.Rd man/set_species.Rd man/set_spraying.Rd man/set_tbv.Rd man/steph_params.Rd tests/performance/profile.R tests/testthat.R tests/testthat/helper-integration.R tests/testthat/test-antimalarial-resistance.R tests/testthat/test-biology.R tests/testthat/test-biting-integration.R tests/testthat/test-biting.R tests/testthat/test-compartmental.R tests/testthat/test-compatibility.R tests/testthat/test-competing-hazards.R tests/testthat/test-correlation.R tests/testthat/test-cpp.R tests/testthat/test-demography.R tests/testthat/test-emergence-integration.R tests/testthat/test-emergence.R tests/testthat/test-infection-integration.R tests/testthat/test-infection.R tests/testthat/test-lag.R tests/testthat/test-mda.R tests/testthat/test-mixing-integration.R tests/testthat/test-mortality-integration.R tests/testthat/test-output.R tests/testthat/test-parameter_draws.R tests/testthat/test-pev-epi.R tests/testthat/test-pev.R tests/testthat/test-pmc.R tests/testthat/test-process-integration.R tests/testthat/test-processes.R tests/testthat/test-progression.R tests/testthat/test-random.R tests/testthat/test-render.R tests/testthat/test-resume.R tests/testthat/test-seasonality.R tests/testthat/test-simulation-e2e.R tests/testthat/test-tbv.R tests/testthat/test-treatment.R tests/testthat/test-utils.R tests/testthat/test-variables.R tests/testthat/test-vector-control.R touchstone/footer.R touchstone/header.R touchstone/script.R vignettes/Antimalarial_Resistance.Rmd vignettes/Carrying-capacity.Rmd vignettes/Demography.Rmd vignettes/EIRprevmatch.Rmd vignettes/MDA.Rmd vignettes/Metapopulation.Rmd vignettes/Model.Rmd vignettes/Parameter_variation.Rmd vignettes/SetSpecies.Rmd vignettes/Treatment.Rmd vignettes/Vaccines.Rmd vignettes/Variation.Rmd vignettes/VectorControl_Bednets.Rmd vignettes/VectorControl_IRS.Rmd