write_datapack_csv: Export naomi outputs to PEPFAR Data Pack format

In mrc-ide/naomi: Naomi Model for Subnational HIV Estimates

Export naomi outputs to PEPFAR Data Pack format

Description

Export naomi outputs to PEPFAR Data Pack format

Usage

write_datapack_csv(naomi_output, path, psnu_level = NULL, dmppt2_output = NULL)

Arguments

naomi_output	a naomi_output object.
path	path to save Data Pack CSV.
psnu_level	area_level for PEPFAR PSNU to export. If NULL, first looks in lookup table for the correct area_level, and if not defaults to the highest level of the area hierarchy.
dmppt2_output	data frame containing the Datapack inputs sheet of DMPPT2 output file.

Details

The results will include Naomi outputs for area_id at the specified level, irrespective of whether a Datim map_id is available.

If a datim ID is available, the Datim map_name will be used in the column psnu. Otherwise the Naomi area_name will be used for the column psnu.

PEPFAR indicator codes for Data Pack are in this Datim view: https://www.datim.org/api/sqlViews/DotdxKrNZxG/data.html+css?var=dataSets:j7jzezIhgPj

PEPFAR PSNU UIDs are in this Datim view: https://www.datim.org/api/sqlViews/gsaaxFM8ZN0/data.html+css

(Replace the extensions .html+css with .csv to download tables as CSV.)

mrc-ide/naomi documentation built on Jan. 6, 2025, 10:20 a.m.