make_vaccine_parameters: Combine and verify vaccine parameters

In mrc-ide/safir: Individual-Based Model of COVID Transmission

Combine and verify vaccine parameters

Description

Combine parameters for simulation and verify for correctness.

Usage

make_vaccine_parameters(
  safir_parameters,
  vaccine_ab_parameters,
  vaccine_set,
  dose_period,
  strategy_matrix,
  next_dose_priority_matrix
)

Arguments

safir_parameters	a list from get_parameters
vaccine_ab_parameters	a list from get_vaccine_ab_titre_parameters
vaccine_set	a vector giving the number of doses available each day (not each timestep)
dose_period	a vector giving the minimum delay between doses
strategy_matrix	a vaccine strategy matrix from strategy_matrix or a list of strategy matrices, one for each vaccine dose
next_dose_priority_matrix	a binary matrix giving age groups prioritized for next dose; it should have one fewer row than the number of doses being given, because on the final allocation phase there will be no future dose to prioritize

Note

If modeling a single dose, dose_period must be a vector of length 1 and next_dose_priority_matrix may be set to NULL.

mrc-ide/safir documentation built on Aug. 2, 2022, 10:47 a.m.