Man pages for mrc-ide/safir2
Individual-Based Model of COVID Transmission
| add_named_listener | Add named listener to an event |
| attach_event_listeners | Attach listeners to events |
| create_age_variables | Create age variables |
| create_compartment_variables | Create compartmental state variables |
| create_continuous_age_variable | Continuous age variable |
| create_discrete_age_variable | Discrete age variable |
| create_events | Create disease progression events |
| create_event_scheduler_listener | A listener to schedule future events |
| create_state_update_listener | A listener to update state |
| create_variables | Create age & compartment variables |
| get_asymptomatic | Function to add asymptomatic information |
| get_population | Get population from SQUIRE model |
| get_squire_parameters | Get parameters from squire model |
| get_state_vector | Get vector of states from parameters |
| identify_ages_to_adjust | Identify ages to adjust |
| interp_input_par | Interpolate input parameters |
| interpolate_rt | Produce piecewise linear Rt |
| iso3c_ages | Median ages for countries |
| make_get_age_probabilities | Get age-structured transition probabilities at current... |
| make_get_contact_matrix | Get contact matrix at current timestep |
| make_get_NAT | Make function to calculate population NAT |
| make_get_vector | Get vector or scalar parameter at current timestep |
| make_get_ve_severe | Make function to calculate efficacy against severe disease |
| make_rerlang | Make Erlang waiting time distribution |
| make_rexp | Make exponential waiting time distribution |
| safir2 | safir2: squire and friends individual rewrite rewrite |
| swap_ages | Swap values that have been identified |
| ve_infection_functional_form | Function for efficacy against infection |
