create_events: Create disease progression events

In mrc-ide/safir2: Individual-Based Model of COVID Transmission

Description

Create named list of individual::TargetedEvent objects which simulate disease progression. The list of events is as follows:

• exposure: scheduled when an individual is infected

• mild_infection: scheduled from exposure

• asymp_infection: scheduled from exposure

• severe_infection: scheduled from exposure

• hospitilisation: scheduled from severe_infection

• ICU_get_live: scheduled from hospitilisation

• ICU_get_die: scheduled from hospitilisation

• hosp_get_live: scheduled from hospitilisation

• hosp_get_die: scheduled from hospitilisation

• ICU_not_get_live: scheduled from hospitilisation

• ICU_not_get_die: scheduled from hospitilisation

• hosp_not_get_live: scheduled from hospitilisation

• hosp_not_get_die: scheduled from hospitilisation

• stepdown: scheduled from ICU_get_live

• recovery: scheduled from mild_infection, asymp_infection, ICU_not_get_live, hosp_get_live, hosp_not_get_live

• immunity_loss: scheduled from recovery

• death: scheduled from ICU_get_die, ICU_not_get_die, hosp_get_die, hosp_not_get_die

Usage

create_events(parameters)

Arguments

parameters

model parameters

mrc-ide/safir2 documentation built on Jan. 14, 2022, 9:37 p.m.