get_squire_parameters: Get parameters from squire model

In mrc-ide/safir2: Individual-Based Model of COVID Transmission

Description

Get parameters from squire model

Usage

get_squire_parameters(
  iso3c = NULL,
  population = NULL,
  contact_matrix_set = NULL,
  time_period = 365,
  max_age = 100,
  lambda_external = NULL,
  dt,
  ...
)

Arguments

iso3c	Character for country iso3c
population	Population vector (for each age group). Default = NULL, which will cause population to be sourced from country
contact_matrix_set	Contact matrices used in simulation. Default = NULL, which will generate this based on the country.
time_period	length of simulation (in days)
max_age	the maximum age for humans
lambda_external	a vector of length equal to time_period giving an additional additive term contributing to the force of infection. Models infectious contacts the population has with external (unmodeled) populations.
dt	size of time step
...	Other parameters for squire::parameters_explicit_SEEIR

Value

squire model parameters

mrc-ide/safir2 documentation built on Jan. 14, 2022, 9:37 p.m.