| %>% |
Man page
|
| afg_fit |
Man page
|
| apply_dose_delay_booster |
Source code
|
| ar_plot |
Man page
Source code
|
| assert_distribution |
Source code
|
| assert_particle_data_df |
Source code
|
| assign_infections |
Source code
|
| beta_est |
Source code
|
| beta_est.booster_min_model |
Man page
Source code
|
| beta_est.booster_model |
Man page
Source code
|
| beta_est.default |
Man page
Source code
|
| beta_est_booster |
Source code
|
| bhu_fit |
Man page
|
| block_interpolate |
Man page
Source code
|
| calc_likelihoods_rt_optimise_output |
Source code
|
| calc_loglikelihood_booster |
Man page
Source code
|
| calc_loglikelihood_variant |
Man page
Source code
|
| cdp_plot |
Man page
Source code
|
| compare_adjustment_plot |
Man page
Source code
|
| convert_change_to_value |
Source code
|
| convert_pars.list |
Source code
|
| country_immunity_plot |
Man page
Source code
|
| default_durs_booster |
Source code
|
| default_probs_booster |
Source code
|
| default_probs_booster_min |
Source code
|
| default_vaccine_pars_booster |
Source code
|
| default_vaccine_pars_booster_min |
Source code
|
| dp_plot |
Man page
Source code
|
| evaluate_Rt_pmcmc_custom |
Source code
|
| evaluate_Rt_pmcmc_simple |
Source code
|
| excess_log_likelihood |
Man page
Source code
|
| excess_log_likelihood_vaccine |
Man page
Source code
|
| extend_vaccine_inputs |
Man page
Source code
|
| format_projection_variable |
Source code
|
| format_rel_inf_vacc_for_odin_booster |
Source code
|
| format_rel_inf_vacc_for_odin_booster_min |
Source code
|
| format_squirepage |
Source code
|
| format_ve_d_for_odin_booster |
Source code
|
| format_ve_d_for_odin_booster_min |
Source code
|
| format_ve_i_for_odin_booster |
Source code
|
| format_ve_i_for_odin_booster_min |
Source code
|
| generate_deaths_function |
Source code
|
| generate_draws |
Man page
Source code
|
| generate_draws.default |
Man page
Source code
|
| generate_draws.rt_optimised |
Man page
Source code
|
| generate_model_function |
Source code
|
| generate_parameters |
Man page
Source code
|
| get_Rt |
Man page
Source code
|
| get_Rt.excess_nimue_simulation |
Man page
Source code
|
| get_Rt.nimue_simulation |
Man page
Source code
|
| get_Rt.rt_optimised |
Man page
Source code
|
| get_Rt.vacc_durR_nimue_simulation |
Man page
Source code
|
| get_WHO_region |
Man page
Source code
|
| get_covax_iso3c |
Man page
Source code
|
| get_cumulative_deaths_rt_optimise_output |
Source code
|
| get_data |
Source code
|
| get_data.excess_nimue_simulation |
Man page
Source code
|
| get_data.nimue_simulation |
Man page
Source code
|
| get_data.rt_optimised |
Man page
Source code
|
| get_data_end_date |
Source code
|
| get_data_end_date.excess_nimue_simulation |
Man page
Source code
|
| get_data_end_date.nimue_simulation |
Man page
Source code
|
| get_data_end_date.rt_optimised |
Man page
Source code
|
| get_data_end_date_inner |
Source code
|
| get_data_end_date_inner.excess_nimue_simulation |
Man page
Source code
|
| get_data_end_date_inner.nimue_simulation |
Man page
Source code
|
| get_data_end_date_inner.rt_optimised |
Man page
Source code
|
| get_data_start_date |
Source code
|
| get_data_start_date.excess_nimue_simulation |
Man page
Source code
|
| get_data_start_date.nimue_simulation |
Man page
Source code
|
| get_data_start_date.rt_optimised |
Man page
Source code
|
| get_dates |
Source code
|
| get_dates.excess_nimue_simulation |
Man page
Source code
|
| get_dates.nimue_simulation |
Man page
Source code
|
| get_dates.rt_optimised |
Man page
Source code
|
| get_dates_greater |
Source code
|
| get_dates_greater.excess_nimue_simulation |
Man page
Source code
|
| get_dates_greater.nimue_simulation |
Man page
Source code
|
| get_dates_greater.rt_optimised |
Man page
Source code
|
| get_delay |
Source code
|
| get_delta_prop |
Source code
|
| get_future_Rt |
Man page
Source code
|
| get_gavi_iso3c |
Man page
Source code
|
| get_global_fund_iso3c |
Man page
Source code
|
| get_immunity_ratios |
Man page
Source code
|
| get_immunity_ratios.default |
Man page
Source code
|
| get_immunity_ratios.rt_optimised |
Man page
Source code
|
| get_income_group |
Man page
Source code
|
| get_lc |
Source code
|
| get_model_likelihood |
Source code
|
| get_model_likelihood.excess_nimue_simulation |
Source code
|
| get_model_likelihood.lmic_booster_nimue_simulation |
Source code
|
| get_model_likelihood.lmic_nimue_simulation |
Source code
|
| get_model_likelihood.nimue_simulation |
Source code
|
| get_model_likelihood.vacc_durR_nimue_simulation |
Source code
|
| get_parameters |
Source code
|
| get_parameters.default |
Man page
Source code
|
| get_parameters.rt_optimised |
Man page
Source code
|
| get_time_series |
Source code
|
| ll_negative_binomial |
Source code
|
| loadCounterfactualData |
Man page
Source code
|
| make_list |
Source code
|
| nimue_booster |
Source code
|
| nimue_booster_diff |
Source code
|
| nimue_booster_min_model |
Man page
Source code
|
| nimue_booster_minimal |
Source code
|
| nimue_booster_minimal_diff |
Source code
|
| nimue_booster_model |
Man page
Source code
|
| nimue_format |
Man page
Source code
|
| optimise_Rt |
Source code
|
| parameters_booster |
Source code
|
| parameters_booster_min |
Source code
|
| particle_optimise_R0 |
Source code
|
| plot.excess_nimue_simulation |
Man page
Source code
|
| plot.rt_optimised |
Man page
Source code
|
| plot.rt_optimised_trimmed |
Man page
Source code
|
| pmcmc_drjacoby |
Man page
Source code
|
| pmcmc_excess |
Man page
Source code
|
| pos |
Source code
|
| projections |
Man page
Source code
|
| projections.default |
Man page
Source code
|
| projections.rt_optimised |
Man page
Source code
|
| rt_optimise |
Man page
Source code
|
| rt_plot_immunity |
Man page
Source code
|
| run_booster |
Man page
Source code
|
| run_booster_min |
Source code
|
| run_deterministic_comparison_cases |
Source code
|
| run_deterministic_comparison_excess |
Source code
|
| scale_ves |
Source code
|
| sero_plot |
Man page
Source code
|
| setup_parameters |
Source code
|
| setup_parameters.booster_min_model |
Man page
Source code
|
| setup_parameters.default |
Man page
Source code
|
| setup_parameters.nimue_model |
Man page
Source code
|
| squire.page |
Man page
|
| squire.page-package |
Man page
|
| trim_rt_optimise |
Man page
Source code
|
| update_Rt |
Man page
Source code
|
| update_initial_state |
Source code
|
| vaccine_efficacies_to_efficacy_ts |
Source code
|
