Man pages for ms609/ProfileParsimony
Phylogenetic Inference by Profile Parsimony
| congreveLamsdellMatrices | 100 simulated data matrices |
| DFact | Double factorial |
| Evaluate | Evaluate tree |
| ICPerStep | Information content per step |
| ICSteps | Information Content Steps |
| InfoAmounts | Amount of information in each character |
| LDFact | Log double factorial Handles odd and even inout numbers |
| LDFactorial | Log double factorial |
| LogisticPoints | Logistic Points Extract points from a fitted model |
| N1Spr | Number of trees on SPR step away Formula given by Given by... |
| NamedConstant | Named constant |
| NRooted | Number of rooted/unrooted trees These functions return the... |
| PhyDat | Load phyDat object |
| PrepareDataProfile | Prepare data for Profile Parsimony |
| ProfileParsimony-package | Phylogenetic Inference using Profile Parsimony |
| ProfileScore | Profile Parsimony Score |
| referenceTree | Tree topology for matrix simulation |
| WithOneExtraStep | Number of trees with one extra step |
