congreveLamsdellMatrices | 100 simulated data matrices |
DFact | Double factorial |
Evaluate | Evaluate tree |
ICPerStep | Information content per step |
ICSteps | Information Content Steps |
InfoAmounts | Amount of information in each character |
LDFact | Log double factorial Handles odd and even inout numbers |
LDFactorial | Log double factorial |
LogisticPoints | Logistic Points Extract points from a fitted model |
N1Spr | Number of trees on SPR step away Formula given by Given by... |
NamedConstant | Named constant |
NRooted | Number of rooted/unrooted trees These functions return the... |
PhyDat | Load phyDat object |
PrepareDataProfile | Prepare data for Profile Parsimony |
ProfileParsimony-package | Phylogenetic Inference using Profile Parsimony |
ProfileScore | Profile Parsimony Score |
referenceTree | Tree topology for matrix simulation |
WithOneExtraStep | Number of trees with one extra step |
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