congreveLamsdellMatrices: 100 simulated data matrices

In ms609/ProfileParsimony: Phylogenetic Inference by Profile Parsimony

Description

Contains the 100 simulated matrices generated by Congreve & Lamsdell (2016) using a heterogeneous Markov-k model, generated from the referenceTree topology, with all branches sharing an equal length.

Usage

congreveLamsdellMatrices

Format

A list with 100 entries, each comprising a phyDat object of 55 characters for 22 taxa

Source

http://datadryad.org/resource/doi:10.5061/dryad.7dq0j

References

Congreve, C. R., & Lamsdell, J. C. (2016). Implied weighting and its utility in palaeontological datasets: a study using modelled phylogenetic matrices. Palaeontology, online ahead of print. doi:10.1111/pala.12236

Congreve, C. R., & Lamsdell, J. C. (2016). Data from: Implied weighting and its utility in palaeontological datasets: a study using modelled phylogenetic matrices. Dryad Digital Repository, doi:10.5061/dryad.7dq0j

Examples

  data('referenceTree')
  data('congreveLamsdellMatrices')
  ProfileScore(referenceTree, PrepareDataProfile(congreveLamsdellMatrices[[17]]))

ms609/ProfileParsimony documentation built on May 23, 2019, 7:49 a.m.