Files in ms609/inapplicable
Inapplicable data in parsimony analysis
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md
R/data.R
R/fitch.R
R/morphy_objects.R
R/morphyex.R
R/prepare_data.R
R/tree_rearrange.R
R/tree_search.R
R/visualise.R
R/zzz.R
README.md
cran-comments.md
data/inapplicable.datasets.RData
inst/CITATION
inst/extdata/Agnarsson2004.nex
inst/extdata/Aguado2009.nex
inst/extdata/Aria2015.nex
inst/extdata/Asher2005.nex
inst/extdata/Capa2011.nex
inst/extdata/Conrad2008.nex
inst/extdata/DeAssis2011.nex
inst/extdata/Dikow2009.nex
inst/extdata/Eklund2004.nex
inst/extdata/Geisler2001.nex
inst/extdata/Giles2015.nex
inst/extdata/Griswold1999.nex
inst/extdata/Liljeblad2008.nex
inst/extdata/Loconte1991.nex
inst/extdata/Longrich2010.nex
inst/extdata/OLeary1999.nex
inst/extdata/OMeara2014.nex
inst/extdata/Rougier2012.nex
inst/extdata/Rousset2004.nex
inst/extdata/Sano2011.nex
inst/extdata/Sansom2010.nex
inst/extdata/Schulze2007.nex
inst/extdata/Shultz2007.nex
inst/extdata/Vinther2008.nex
inst/extdata/Wetterer2000.nex
inst/extdata/Wills2012.nex
inst/extdata/Wilson2003.nex
inst/extdata/Wortley2006.nex
inst/extdata/Zanol2014.nex
inst/extdata/Zhu2013.nex
inst/informal_test.R
inst/tests/test-counting.R
man-roxygen/clusterParam.r
man-roxygen/datasetParam.r
man-roxygen/inapplicableSources.r
man-roxygen/labelledTreeParam.r
man-roxygen/morphyObjParam.r
man-roxygen/returnPhydat.r
man-roxygen/studyReference.r
man-roxygen/treeParam.r
man-roxygen/verbosityParam.r
man/AsBinary.Rd
man/DoTreeSearch.Rd
man/InapplicableFitch.Rd
man/LoadMorphy.Rd
man/MorphyDat.Rd
man/MorphyLength.Rd
man/MorphyWeights.Rd
man/PhyToString.Rd
man/SetMorphyWeights.Rd
man/StringToMorphy.Rd
man/StringToPhyDat.Rd
man/UnloadInapplicable.Rd
man/UnloadMorphy.Rd
man/inapplicable-package.Rd
man/mpl_apply_tipdata.Rd
man/mpl_attach_rawdata.Rd
man/mpl_attach_symbols.Rd
man/mpl_delete_Morphy.Rd
man/mpl_delete_rawdata.Rd
man/mpl_first_down_recon.Rd
man/mpl_first_up_recon.Rd
man/mpl_get_charac_weight.Rd
man/mpl_get_num_charac.Rd
man/mpl_get_num_internal_nodes.Rd
man/mpl_get_numtaxa.Rd
man/mpl_get_symbols.Rd
man/mpl_init_Morphy.Rd
man/mpl_new_Morphy.Rd
man/mpl_second_down_recon.Rd
man/mpl_second_up_recon.Rd
man/mpl_set_charac_weight.Rd
man/mpl_set_num_internal_nodes.Rd
man/mpl_set_parsim_t.Rd
man/mpl_translate_error.Rd
man/mpl_update_lower_root.Rd
man/mpl_update_tip.Rd
man/summary.morphyPtr.Rd
src/RMorphy.c
src/RMorphy.h
src/RMorphyUtils.c
src/RMorphyUtils.h
src/RMorphyex.c
src/fitch.c
src/fitch.h
src/from_ape.c
src/inapplicable-init.c
src/morphy.c
src/morphy.h
src/morphydefs.h
src/mpl.c
src/mpl.h
src/mplerror.h
src/statedata.c
src/statedata.h
src/wagner.c
src/wagner.h
tests/testthat.R
tests/testthat/test-morphy-counts.R
tests/testthat/test-tree-search.R
vignettes/getting-started.Rmd
