Man pages for ms609/inapplicable
Inapplicable data in parsimony analysis
| AsBinary | Convert a number to binary |
| DoTreeSearch | DoTreeSearch |
| InapplicableFitch | Calculate parsimony score with inapplicable data |
| inapplicable-package | Inapplicable data in parsimony analysis |
| LoadMorphy | Initialize a Morphy Object from a phyDat object |
| MorphyDat | PhyDat to MorphyDat |
| MorphyLength | Calculate parsimony score with inapplicable data |
| MorphyWeights | Report the character weightings associated with a Morphy... |
| mpl_apply_tipdata | Commits parameters prior to nodal set calculations. |
| mpl_attach_rawdata | Attach raw character state data (i.e. tip data). |
| mpl_attach_symbols | Attach a caller-specified list of symbols. |
| mpl_delete_Morphy | Destroys an instance of a Morphy object. |
| mpl_delete_rawdata | Deletes the caller-input data. |
| mpl_first_down_recon | Reconstructs the first (downpass) nodal reconstructions |
| mpl_first_up_recon | Reconstructs the second (uppass) nodal reconstructions. |
| mpl_get_charac_weight | Retrieve the weight of a character in the dataset |
| mpl_get_num_charac | Retrieve the number of character (columns) in the dataset. |
| mpl_get_num_internal_nodes | Gets the number of internal nodal reconstruction sets being... |
| mpl_get_numtaxa | Retrieve the number of taxa (rows) in the dataset. |
| mpl_get_symbols | Retrieves the current list of symbols. |
| mpl_init_Morphy | Sets up the dimensions of the dataset. |
| mpl_new_Morphy | Creates a new instance of a Morphy object |
| mpl_second_down_recon | Performs the second nodal reconstructions for characters with... |
| mpl_second_up_recon | Finalises the ancestral state reconstructions for characters... |
| mpl_set_charac_weight | Set the weight of a character in the dataset |
| mpl_set_num_internal_nodes | Sets the number of internal nodes in the dataset |
| mpl_set_parsim_t | Sets a character's parsimony function type |
| mpl_translate_error | Converts a numeric error code to human-readable format |
| mpl_update_lower_root | Updates the nodal sets for a lower ('dummy') root node |
| mpl_update_tip | Initial update of tip values following uppass reconstruction. |
| PhyToString | Extract character data from a phyDat object as a string |
| SetMorphyWeights | Set the character weightings associated with a Morphy object |
| StringToMorphy | String to MorphyDat |
| StringToPhyDat | String to phyDat |
| summary.morphyPtr | Details the attributes of a morphy object |
| UnloadInapplicable | Unload this library |
| UnloadMorphy | Destroy a Morphy Object |
