API for msberends/AMR
Antimicrobial Resistance Analysis

Global functions
%like% Man page
AMR Man page
AMR-deprecated Man page
EUCAST_rules Man page Source code
ITIS Man page
TEMPORARY_TAXONOMY Source code
WHOCC Man page
WHONET Man page
ab_atc Man page Source code
ab_certe Man page Source code
ab_name Man page Source code
ab_official Man page Source code
ab_property Man page Source code
ab_tradenames Man page Source code
ab_trivial_nl Man page Source code
ab_umcg Man page Source code
abname Man page Source code
addin_insert_in Source code
addin_insert_like Source code
age Man page Source code
age_groups Man page Source code
anti_join_microorganisms Man page Source code
antibiotics Man page
as.atc Man page Source code
as.data.frame.atc Source code
as.data.frame.frequency_tbl Source code
as.data.frame.mo Source code
as.double.mic Source code
as.integer.mic Source code
as.mic Man page Source code
as.mo Man page Source code
as.numeric.mic Source code
as.rsi Man page Source code
as.vector.frequency_tbl Source code
as_tibble.frequency_tbl Source code
atc Man page
atc_certe Man page Source code
atc_ddd Man page Source code
atc_groups Man page Source code
atc_name Man page
atc_official Man page Source code
atc_online_ddd Man page Source code
atc_online_groups Man page Source code
atc_online_property Man page Source code
atc_property Man page Source code
atc_tradenames Man page Source code
atc_trivial_nl Man page Source code
atc_umcg Man page Source code
availability Man page Source code
barplot.mic Source code
barplot.rsi Source code
brmo Man page Source code
check_available_columns Source code
count Man page
count_I Man page Source code
count_IR Man page Source code
count_R Man page Source code
count_S Man page Source code
count_SI Man page Source code
count_all Man page Source code
count_df Man page Source code
cqv Source code
create_barplot_mic Source code
cv Source code
diff.frequency_tbl Source code
droplevels.mic Source code
droplevels.rsi Source code
eucast_exceptional_phenotypes Man page Source code
eucast_rules Man page Source code
exec_as.mo Source code
facet_rsi Man page Source code
filter_first_isolate Man page Source code
filter_first_weighted_isolate Man page Source code
first_isolate Man page Source code
format.frequency_tbl Source code
format_header Source code
freq Man page
frequency_tbl Man page Source code
full_join_microorganisms Man page Source code
g.test Man page Source code
geom_rsi Man page Source code
get_locale Man page Source code
get_mo_source Man page Source code
getlbls Source code
ggplot_rsi Man page Source code
ggplot_rsi_predict Man page Source code
guess_ab_col Man page Source code
guess_atc Man page Source code
guess_mo Man page Source code
header Man page Source code
hist.frequency_tbl Source code
inner_join Man page
inner_join_microorganisms Man page Source code
interpretive_reading Man page Source code
is.atc Man page Source code
is.mic Man page Source code
is.mo Man page Source code
is.rsi Man page Source code
is.rsi.eligible Man page Source code
join Man page
joins_check_df Source code
key_antibiotics Man page Source code
key_antibiotics_equal Man page Source code
kurtosis Man page Source code
kurtosis.data.frame Man page Source code
kurtosis.default Man page Source code
kurtosis.matrix Man page Source code
labels_rsi_count Man page Source code
left_join_microorganisms Man page Source code
like Man page Source code
mdro Man page Source code
mic_like Source code
microorganisms Man page
microorganisms.codes Man page
microorganisms.old Man page
microorganisms.oldDT Man page
microorganisms.prevDT Man page
microorganisms.unprevDT Man page
microorganismsDT Man page
mo Man page
mo_TSN Man page Source code
mo_authors Man page Source code
mo_class Man page Source code
mo_failures Man page Source code
mo_family Man page Source code
mo_fullname Man page Source code
mo_genus Man page Source code
mo_gramstain Man page Source code
mo_kingdom Man page Source code
mo_order Man page Source code
mo_phylum Man page Source code
mo_property Man page Source code
mo_ref Man page Source code
mo_renamed Man page Source code
mo_shortname Man page Source code
mo_source Man page
mo_species Man page Source code
mo_subkingdom Man page Source code
mo_subspecies Man page Source code
mo_taxonomy Man page Source code
mo_translate Source code
mo_type Man page Source code
mo_uncertainties Man page Source code
mo_validate Source code
mo_year Man page Source code
mrgn Man page Source code
n_rsi Man page Source code
onLoad Source code
p.symbol Man page Source code
percent Source code
plot.frequency_tbl Source code
plot.mic Source code
plot.resistance_predict Man page Source code
plot.rsi Source code
portion Man page
portion_I Man page Source code
portion_IR Man page Source code
portion_R Man page Source code
portion_S Man page Source code
portion_SI Man page Source code
portion_df Man page Source code
print.atc Source code
print.frequency_tbl Man page Source code
print.mic Source code
print.mo Source code
print.rsi Source code
pull.atc Source code
pull.mo Source code
ratio Man page Source code
read.4D Man page Source code
resistance_predict Man page Source code
right_join_microorganisms Man page Source code
round2 Source code
rsi Man page Source code
rsi_calc Source code
rsi_predict Man page
scale_rsi_colours Man page Source code
scale_y_percent Man page Source code
search_type_in_df Source code
select.frequency_tbl Source code
semi_join_microorganisms Man page Source code
septic_patients Man page
set_mo_source Man page Source code
size_humanreadable Source code
skewness Man page Source code
skewness.data.frame Man page Source code
skewness.default Man page Source code
skewness.matrix Man page Source code
summary.mic Source code
summary.mo Source code
summary.rsi Source code
supplementary_data Man page
theme_rsi Man page Source code
top_freq Man page Source code
was_renamed Source code
msberends/AMR documentation built on Feb. 15, 2019, 3:43 a.m.