example_isolates: Data Set with 2 000 Example Isolates

In msberends/AMR: Antimicrobial Resistance Data Analysis

Data Set with 2 000 Example Isolates

Description

A data set containing 2 000 microbial isolates with their full antibiograms. This data set contains randomised fictitious data, but reflects reality and can be used to practise AMR data analysis. For examples, please read the tutorial on our website.

Usage

example_isolates

Format

A tibble with 2 000 observations and 46 variables:

• date
  Date of receipt at the laboratory

• patient
  ID of the patient

• age
  Age of the patient

• gender
  Gender of the patient, either "F" or "M"

• ward
  Ward type where the patient was admitted, either "Clinical", "ICU", or "Outpatient"

• mo
  ID of microorganism created with as.mo(), see also the microorganisms data set

• PEN:RIF
  40 different antibiotics with class sir (see as.sir()); these column names occur in the antibiotics data set and can be translated with set_ab_names() or ab_name()

Details

Like all data sets in this package, this data set is publicly available for download in the following formats: R, MS Excel, Apache Feather, Apache Parquet, SPSS, and Stata. Please visit our website for the download links. The actual files are of course available on our GitHub repository.

Examples

example_isolates

msberends/AMR documentation built on March 5, 2025, 2:28 p.m.