esbl_isolates: Data Set with 500 ESBL Isolates

In msberends/AMR: Antimicrobial Resistance Data Analysis

Data Set with 500 ESBL Isolates

Description

A data set containing 500 microbial isolates with MIC values of common antibiotics and a binary esbl column for extended-spectrum beta-lactamase (ESBL) production. This data set contains randomised fictitious data but reflects reality and can be used to practise AMR-related machine learning, e.g., classification modelling with tidymodels.

Usage

esbl_isolates

Format

A tibble with 500 observations and 19 variables:

• esbl
  Logical indicator if the isolate is ESBL-producing

• genus
  Genus of the microorganism

• AMC:COL
  MIC values for 17 antimicrobial agents, transformed to class mic (see as.mic())

Details

See our tidymodels integration for an example using this data set.

Examples

esbl_isolates

msberends/AMR documentation built on June 14, 2025, 7:58 a.m.