export_ncbi_biosample: Export Data Set as NCBI BioSample Antibiogram

In msberends/AMR: Antimicrobial Resistance Data Analysis

Export Data Set as NCBI BioSample Antibiogram

Description

Export Data Set as NCBI BioSample Antibiogram

Usage

export_ncbi_biosample(x, filename = paste0("biosample_", format(Sys.time(),
  "%Y-%m-%d-%H%M%S"), ".xlsx"), type = "pathogen MIC",
  columns = where(is.mic), save_as_xlsx = TRUE)

Arguments

x	a data set
filename	a character string specifying the file name
type	a character string specifying the type of data set, either "pathogen MIC" or "beta-lactamase MIC", see https://www.ncbi.nlm.nih.gov/biosample/docs/

msberends/AMR documentation built on March 5, 2025, 2:28 p.m.