export_ncbi_biosample: Export Data Set as NCBI BioSample Antibiogram
In msberends/AMR: Antimicrobial Resistance Data Analysis

export_ncbi_biosample

R Documentation

Export Data Set as NCBI BioSample Antibiogram

Description

Export Data Set as NCBI BioSample Antibiogram

Usage

export_ncbi_biosample(x, filename = paste0("biosample_", format(Sys.time(),
  "%Y-%m-%d-%H%M%S"), ".xlsx"), type = "pathogen MIC",
  columns = where(is.mic), save_as_xlsx = TRUE)

Arguments

`x`	A data set.
`filename`	A character string specifying the file name.
`type`	A character string specifying the type of data set, either "pathogen MIC" or "beta-lactamase MIC", see https://www.ncbi.nlm.nih.gov/biosample/docs/.