dendrosor: Sorensen dissimilarity index based on a dendrogram
In mtalluto/mbmtools: Multifaceted Biodiversity Modelling

Description Usage Arguments Value References

Produces dissimilarity matrices using a species by species distance matrix; useful for example for functional diversity.

1	dendrosor(comm, distmat, partition = TRUE, ...)

`comm`	Community matrix giving sites (rows) by species (columns).
`distmat`	Distance matrix; margins must match exactly the columns in comm
`partition`	Logical; if true, the index will be partitioned into turnover and nestedness.
`...`	Additional arguments to pass to `hclust`.

If partition == TRUE, list of three matrices giving the turnover, nestedness, and total components of dissimilarity. Otherwise, a matrix of pairwise dissimilarity values between communities.

Pavoine, S. and Ricotta, C. 2014. Functional and phylogenetic similarity among communities. Methods in Ecology and Evolution 5(7): 666–675.

mtalluto/mbmtools documentation built on Aug. 13, 2019, 9:44 a.m.