Description Usage Arguments Details Value
Mean pairwise distance
1 | mpd(comm, phylogeny, dis, dis.transform)
|
comm |
Community matrix giving sites (rows) by species (columns). Column names should match the names in the phylogeny |
phylogeny |
Phylogeny in the format used by |
dis |
Species distance matrix; if missing will be extracted from the phylogeny |
dis.transform |
Function (e.g., sqrt) to transform distance before computing mpd |
Computes mean pairwise distance (MPD) for all site pairs (including within and between site MPD)
Matrix of pairwise distances; diagonal is witin site (alpha) MPD, other values are pairwise distances (beta MPD)
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