extract.genotype: Generates a c(0,1,2) genotype matrix from a list of marker...
In mtmcgowan/PolySNPclust: Clusters Infinium SNP chip data in polyploid species and calls bi-allelic genotypes
Description
Usage
Arguments
Value
Description
Uses a gbm model to predict whether to keep or remove clusters
Usage
1
extract.genotype(markerlist, GSdata, mixmodout, clust_stats)
Arguments
markerlist
A character vector of marker names
GSdata
A list of R and Theta data.frames
mixmodout
Rmixmod clustering results
Value
A numerical matrix with rows = markers and columns = samples
mtmcgowan/PolySNPclust documentation built on May 31, 2019, 8:43 a.m.
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Description Usage Arguments Value
Description
Uses a gbm model to predict whether to keep or remove clusters
Usage
1 | extract.genotype(markerlist, GSdata, mixmodout, clust_stats)
|
Arguments
markerlist |
A character vector of marker names |
GSdata |
A list of R and Theta data.frames |
mixmodout |
Rmixmod clustering results |
Value
A numerical matrix with rows = markers and columns = samples
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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