processGSexport: Process Genome Studio export
In mtmcgowan/PolySNPclust: Clusters Infinium SNP chip data in polyploid species and calls bi-allelic genotypes
Description
Usage
Arguments
Value
Description
Processes a Genome Studio data export table to only import useful information for clustering (theta and R values) and ignores the rest
Usage
1
processGSexport(exportpath = NULL, transform = "arcsin")
Arguments
exportpath
the path to the GS data export
transform
How to transform theta to control variance. (no transformation = 'none', logit transformation = 'logit', arcsine transformation (default) = 'arcsin')
Value
A list of two data.frames. The first is a table of theta values and the second is a table of intensity values
mtmcgowan/PolySNPclust documentation built on May 31, 2019, 8:43 a.m.
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Description Usage Arguments Value
Description
Processes a Genome Studio data export table to only import useful information for clustering (theta and R values) and ignores the rest
Usage
1 | processGSexport(exportpath = NULL, transform = "arcsin")
|
Arguments
exportpath |
the path to the GS data export |
transform |
How to transform theta to control variance. (no transformation = 'none', logit transformation = 'logit', arcsine transformation (default) = 'arcsin') |
Value
A list of two data.frames. The first is a table of theta values and the second is a table of intensity values
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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