make.training.data: make.training.data

In mtmcgowan/PolySNPclust: Clusters Infinium SNP chip data in polyploid species and calls bi-allelic genotypes

Description

Creates a set of training data for manual scoring using excel from a processed Genome Studio export and an Rmixmod cluster output

Usage

make.training.data(GSdata, mixmodout, marknum = 100, seed = NULL)

Arguments

GSdata	Processed GenomeStudio data
mixmodout	Clustering output from step 2
marknum	The number of markers to sample for each cluster category (total = 4 * marknum)
seed	Fix the random seed for reproducibility

Value

A folder containing a partially populated .csv file and a nested folder of marker plots corresponding to the .csv file

mtmcgowan/PolySNPclust documentation built on May 31, 2019, 8:43 a.m.