dwi2response: Estimate response function(s) for spherical deconvolution

In muschellij2/mrtrix: Port of MRTrix software

Description

Estimate response function(s) for spherical deconvolution

Usage

dwi2response(infile, algorithm = c("tournier", "dhollander", "msmt_5tt",
  "fa", "tax", "manual"), bvals = NULL, bvecs = NULL, scheme = NULL,
  mask = NULL, lmax = NULL, shells = NULL, outfile = tempfile(),
  opts = "", verbose = TRUE, ...)

Arguments

infile	the input DWI image containing volumes that are both diffusion weighted and b=0
algorithm	algorithm to be used to complete response estimation
bvals	The file containing the b-values.
bvecs	The file containing the b-vectors.
scheme	The file containing a 4xT text file, instead of bvals/bvecs
mask	initial mask for response voxel selection
lmax	The maximum harmonic degree(s) of response function estimation (single value for single-shell response, comma-separated values for multi-shell response)
shells	The b-value shell(s) to use in response function estimation (single value for single-shell response, comma-separated values for multi-shell response)
outfile	Output response file
opts	Additional options to pass
verbose	Print diagnostic output
...	arguments to pass to std_opts

Value

Output filename

Examples

## Not run: 
infile = "~/Downloads/data.nii.gz"
bvals = "~/Downloads/bvals"
bvecs = "~/Downloads/bvecs"
response = dwi2response(infile, bvals = bvals, bvecs = bvecs)

## End(Not run)

muschellij2/mrtrix documentation built on July 9, 2019, 9:15 a.m.