Files in muschellij2/msseg
Segmentation of Lesions for Multiple Sclerosis
.Rbuildignore
.gitignore
.travis.yml
.travis.yml.bak
DESCRIPTION
DESCRIPTION.bak
NAMESPACE
R/all.exists.R
R/auc_pauc.R
R/colScale.R
R/data.R
R/dice.R
R/get_max_dice.R
R/make_df.R
R/make_processed_filenames.R
R/malf_tissue_seg.R
R/msseg_pipeline.R
R/png_converter.R
R/processing.R
R/reapply_malf_tissue_seg.R
R/rowScale.R
R/strip_model.R
R/trim_mean_sd.R
R/unstrip_image.R
R/wmean.R
R/z_images.R
R/z_images_dramms.R
README.Rmd
README.md
appveyor.yml
data/cutoff.rda
data/rf_model_1.rda
data/rf_model_10.rda
data/rf_model_2.rda
data/rf_model_3.rda
data/rf_model_4.rda
data/rf_model_5.rda
data/rf_model_6.rda
data/rf_model_7.rda
data/rf_model_8.rda
data/rf_model_9.rda
inst/JHU_MNI_SS_T1_brain.nii.gz
inst/MASS_Templates/WithCerebellum/Template1.nii.gz
inst/MASS_Templates/WithCerebellum/Template10.nii.gz
inst/MASS_Templates/WithCerebellum/Template10_str_cbq.nii.gz
inst/MASS_Templates/WithCerebellum/Template11.nii.gz
inst/MASS_Templates/WithCerebellum/Template11_str_cbq.nii.gz
inst/MASS_Templates/WithCerebellum/Template12.nii.gz
inst/MASS_Templates/WithCerebellum/Template12_str_cbq.nii.gz
inst/MASS_Templates/WithCerebellum/Template13.nii.gz
inst/MASS_Templates/WithCerebellum/Template13_str_cbq.nii.gz
inst/MASS_Templates/WithCerebellum/Template14.nii.gz
inst/MASS_Templates/WithCerebellum/Template14_str_cbq.nii.gz
inst/MASS_Templates/WithCerebellum/Template15.nii.gz
inst/MASS_Templates/WithCerebellum/Template15_str_cbq.nii.gz
inst/MASS_Templates/WithCerebellum/Template1_str_cbq.nii.gz
inst/MASS_Templates/WithCerebellum/Template2.nii.gz
inst/MASS_Templates/WithCerebellum/Template2_str_cbq.nii.gz
inst/MASS_Templates/WithCerebellum/Template3.nii.gz
inst/MASS_Templates/WithCerebellum/Template3_str_cbq.nii.gz
inst/MASS_Templates/WithCerebellum/Template4.nii.gz
inst/MASS_Templates/WithCerebellum/Template4_str_cbq.nii.gz
inst/MASS_Templates/WithCerebellum/Template5.nii.gz
inst/MASS_Templates/WithCerebellum/Template5_str_cbq.nii.gz
inst/MASS_Templates/WithCerebellum/Template6.nii.gz
inst/MASS_Templates/WithCerebellum/Template6_str_cbq.nii.gz
inst/MASS_Templates/WithCerebellum/Template7.nii.gz
inst/MASS_Templates/WithCerebellum/Template7_str_cbq.nii.gz
inst/MASS_Templates/WithCerebellum/Template8.nii.gz
inst/MASS_Templates/WithCerebellum/Template8_str_cbq.nii.gz
inst/MASS_Templates/WithCerebellum/Template9.nii.gz
inst/MASS_Templates/WithCerebellum/Template9_str_cbq.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template10_Tissue_Classes.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template10_strip.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template11_Tissue_Classes.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template11_strip.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template12_Tissue_Classes.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template12_strip.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template13_Tissue_Classes.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template13_strip.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template14_Tissue_Classes.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template14_strip.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template15_Tissue_Classes.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template15_strip.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template1_Tissue_Classes.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template1_strip.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template2_Tissue_Classes.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template2_strip.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template3_Tissue_Classes.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template3_strip.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template4_Tissue_Classes.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template4_strip.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template5_Tissue_Classes.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template5_strip.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template6_Tissue_Classes.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template6_strip.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template7_Tissue_Classes.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template7_strip.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template8_Tissue_Classes.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template8_strip.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template9_Tissue_Classes.nii.gz
inst/MASS_Templates/WithCerebellum_noneck/Template9_strip.nii.gz
inst/MNI152_T1_1mm_brain.nii.gz
inst/MNI152_T1_1mm_brain_mask.nii.gz
inst/Normed_Templates/Template_FLAIR_DRAMMS_Mean.nii.gz
inst/Normed_Templates/Template_FLAIR_DRAMMS_Median.nii.gz
inst/Normed_Templates/Template_FLAIR_DRAMMS_SD.nii.gz
inst/Normed_Templates/Template_FLAIR_DRAMMS_Z.nii.gz
inst/Normed_Templates/Template_FLAIR_Mean.nii.gz
inst/Normed_Templates/Template_FLAIR_Median.nii.gz
inst/Normed_Templates/Template_FLAIR_SD.nii.gz
inst/Normed_Templates/Template_FLAIR_Z.nii.gz
inst/Normed_Templates/Template_PD_DRAMMS_Mean.nii.gz
inst/Normed_Templates/Template_PD_DRAMMS_Median.nii.gz
inst/Normed_Templates/Template_PD_DRAMMS_SD.nii.gz
inst/Normed_Templates/Template_PD_DRAMMS_Z.nii.gz
inst/Normed_Templates/Template_PD_Mean.nii.gz
inst/Normed_Templates/Template_PD_Median.nii.gz
inst/Normed_Templates/Template_PD_SD.nii.gz
inst/Normed_Templates/Template_PD_Z.nii.gz
inst/Normed_Templates/Template_T1_Post_DRAMMS_Mean.nii.gz
inst/Normed_Templates/Template_T1_Post_DRAMMS_Median.nii.gz
inst/Normed_Templates/Template_T1_Post_DRAMMS_SD.nii.gz
inst/Normed_Templates/Template_T1_Post_DRAMMS_Z.nii.gz
inst/Normed_Templates/Template_T1_Post_Mean.nii.gz
inst/Normed_Templates/Template_T1_Post_Median.nii.gz
inst/Normed_Templates/Template_T1_Post_SD.nii.gz
inst/Normed_Templates/Template_T1_Post_Z.nii.gz
inst/Normed_Templates/Template_T1_Pre_DRAMMS_Mean.nii.gz
inst/Normed_Templates/Template_T1_Pre_DRAMMS_Median.nii.gz
inst/Normed_Templates/Template_T1_Pre_DRAMMS_SD.nii.gz
inst/Normed_Templates/Template_T1_Pre_DRAMMS_Z.nii.gz
inst/Normed_Templates/Template_T1_Pre_Mean.nii.gz
inst/Normed_Templates/Template_T1_Pre_Median.nii.gz
inst/Normed_Templates/Template_T1_Pre_SD.nii.gz
inst/Normed_Templates/Template_T1_Pre_Z.nii.gz
inst/Normed_Templates/Template_T2_DRAMMS_Mean.nii.gz
inst/Normed_Templates/Template_T2_DRAMMS_Median.nii.gz
inst/Normed_Templates/Template_T2_DRAMMS_SD.nii.gz
inst/Normed_Templates/Template_T2_DRAMMS_Z.nii.gz
inst/Normed_Templates/Template_T2_Mean.nii.gz
inst/Normed_Templates/Template_T2_Median.nii.gz
inst/Normed_Templates/Template_T2_SD.nii.gz
inst/Normed_Templates/Template_T2_Z.nii.gz
man/all_exists.Rd
man/auc_pauc.Rd
man/colScale.Rd
man/cutoff.Rd
man/dice.Rd
man/get_max_dice.Rd
man/make_df.Rd
man/make_processed_filenames.Rd
man/malf_tissue_seg.Rd
man/msseg_pipeline.Rd
man/png_converter.Rd
man/process_images.Rd
man/reapply_malf_tissue_seg.Rd
man/rf_model_1.Rd
man/rf_model_10.Rd
man/rf_model_2.Rd
man/rf_model_3.Rd
man/rf_model_4.Rd
man/rf_model_5.Rd
man/rf_model_6.Rd
man/rf_model_7.Rd
man/rf_model_8.Rd
man/rf_model_9.Rd
man/rowScale.Rd
man/strip_model.Rd
man/trim_mean_sd.Rd
man/trimmed_ratio.Rd
man/trimmed_z.Rd
man/unstrip_image.Rd
man/z_images.Rd
man/z_images_dramms.Rd
msseg.Rproj
