Man pages for muschellij2/msseg
Segmentation of Lesions for Multiple Sclerosis
| all_exists | All Files exist |
| auc_pauc | Get the AUC and pAUC for a prediction |
| colScale | Column Centering and Scaling |
| cutoff | Cutoff for random forest model |
| dice | Calculate Dice Coefficient |
| get_max_dice | Get the Maximum Dice Coefficient and Cutoff |
| make_df | Make Data.frame of images |
| make_processed_filenames | Make Processed Filenames |
| malf_tissue_seg | MALF tissue Segmentation |
| msseg_pipeline | MSSeg Pipeline |
| png_converter | Convert set of PNGs to PDF |
| process_images | Process Images for MSSeg |
| reapply_malf_tissue_seg | MALF tissue Segmentation without Re-registration |
| rf_model_1 | Random forest model 1 |
| rf_model_10 | Random forest model |
| rf_model_2 | Random forest model 2 |
| rf_model_3 | Random forest model |
| rf_model_4 | Random forest model |
| rf_model_5 | Random forest model |
| rf_model_6 | Random forest model |
| rf_model_7 | Random forest model |
| rf_model_8 | Random forest model |
| rf_model_9 | Random forest model |
| rowScale | Row Centering and Scaling |
| strip_model | Strip Model to Reduce Memory Footprint |
| trim_mean_sd | Trimmed Mean and Standard Deviation |
| trimmed_ratio | Trimmed Ratio Image |
| trimmed_z | Trimmed Z-score Image |
| unstrip_image | Replace Dropped Dimensions from Stripping |
| z_images | Standardized to Template Images SyN |
| z_images_dramms | Standardized to Template Images DRAMMS |
