Man pages for muschellij2/smri.process
Processing of Structural Magnetic Resonance Imaging
| all_exists | All Files exist |
| ants_smooth_images | Smoothing sMRI data with ANTs |
| apply_mask | Apply Brain mask |
| apply_spatial_normalize | Apply Spatial Normalization |
| bc_noneck_reduce | Bias Correct, Remove Neck, Reduce Image |
| download_template_img_data | Download Eve-Template Normed data |
| fsl_smooth_images | Smoothing sMRI data with FSL |
| gather_predictors | Gather all predictors from norm_predictors function |
| intensity_normalize | SMRI Normalize |
| minmax | Normalize using Min/Max |
| multi_fast | Multiple FAST for PD/T1/T2 |
| n4_raw | N4 Bias Field Correction |
| n4_skull_strip | Skull Strip image |
| noneck | Remove Neck (Doubly) |
| norm_predictors | SMRI Intensity Normalize and Create Predictors |
| quantile_mask | Threshold Quantile Image |
| reduce_img | Reduce Image, Dropping Image Dimensions |
| reg_to_t1 | Register Images to Another image (usually T1) |
| rpi_raw | RPI Orientation of Images |
| seg_normalize | Spatially Normalize SMRI data and Tissue Segmentation |
| set_origin_zero | Set Origin to Zero for the Images |
| smri_corr_img | SMRI Local Correlation Images |
| smri_flipped | SMRI Flipped Image (x-y flipped) |
| smri_moments | Structural MRI Moment images |
| smri_prenormalize | SMRI Pipeline for Preprocessing Prior to Normalization |
| spatial_normalize | Spatially Normalize SMRI data |
| t1_segment | MALF Tissue and Structure Segmentation |
| template_z_score | SMRI Z-score compared to a Template |
| winsor | Winsorize Image |
