t1_segment: MALF Tissue and Structure Segmentation

Description Usage Arguments Value

View source: R/tissue_segment.R

Description

MALF Tissue and Structure Segmentation

Usage

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t1_segment(t1, outdir = tempdir(), num_templates = 35,
  interpolator = "genericLabel", typeofTransform = "SyNAggro",
  verbose = TRUE, malf_prob_function = "staple_prob",
  malf_label_function = "mode", ...)

Arguments

t1

T1-weighted image/filename

outdir

Output directory

num_templates

Number of templates to use for MALF

interpolator

interpolation done in registration

typeofTransform

Transformation to align the templates to the T1

verbose

Print diagnostic messages

malf_prob_function

Function for MALF combination for probability.

malf_label_function

Function for MALF combination for labeling.

...

additional options to pass to malf

Value

Object of class nifti


muschellij2/smri.process documentation built on Oct. 4, 2018, 11:01 a.m.