Man pages for musikutiv/tsTools
Toolbox for Functional Genomics Data Processing in R
| bam2coverage | Convert a bam file to coverage |
| bed2dyad | Convert a bed file to nucleosome dyad coverage |
| bin.matrix | Bin a matrix column-wise and average the bins across rows |
| bin.matrix.rows | Bin a matrix column-wise per row |
| convertToColors | Convert numeric matrix to colors |
| coverageWindowsCenteredStranded | Get windowed strand-oriented coverages around center points |
| coverageWindowsCenteredStrandedParallel | Get windowed strand-oriented coverages around center point,... |
| coverageWindowsStranded | Get windowed strand-oriented coverages |
| coverageWindowsStrandedParallel | Get windowed strand-oriented coverages, parallelized |
| cumPlot | Cumulative plot with interquartile ranges |
| meanScale | Row-wise mean scaling |
| norm.square | Row-wise sum of squares normalization of a matrix |
| norm.sum | Row-wise sum of row normalization of a matrix |
| ocampo | Get ocampo paramters per instance |
| ocampo2 | Get ocampo parameters per instance (Tamas version using ccv) |
| plotProfiles | Plot coverages along genome |
| plotRasterHeatmap | Plot Raster Heatmap of matrix |
