coverageWindowsCenteredStrandedParallel: Get windowed strand-oriented coverages around center point,...
In musikutiv/tsTools: Toolbox for Functional Genomics Data Processing in R
coverageWindowsCenteredStrandedParallel R Documentation
Get windowed strand-oriented coverages around center point, parallelized
Description
Out-of-bound windows will be removed!
Usage
coverageWindowsCenteredStrandedParallel(centers, window.size = 1000, coverage,
n.cores = 2)
Arguments
centers
a data frame of center points with columns 'chr', 'center', 'strand'
window.size
the size of the window surrounding the center position, default 1000
coverage
a coverage object (RleList as returned by coverage)
n.cores
number of processor cores to use. If not defined all detected cores will be used)
Value
a matrix
musikutiv/tsTools documentation built on June 6, 2023, 1:39 a.m.
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| coverageWindowsCenteredStrandedParallel | R Documentation |
Get windowed strand-oriented coverages around center point, parallelized
Description
Out-of-bound windows will be removed!
Usage
coverageWindowsCenteredStrandedParallel(centers, window.size = 1000, coverage,
n.cores = 2)
Arguments
centers |
a data frame of center points with columns 'chr', 'center', 'strand' |
window.size |
the size of the window surrounding the center position, default 1000 |
coverage |
a coverage object ( |
n.cores |
number of processor cores to use. If not defined all detected cores will be used) |
Value
a matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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