Man pages for musikutiv/tsTools
Toolbox for Functional Genomics Data Processing in R

bam2coverageConvert a bam file to coverage
bed2dyadConvert a bed file to nucleosome dyad coverage
bin.matrixBin a matrix column-wise and average the bins across rows
bin.matrix.rowsBin a matrix column-wise per row
convertToColorsConvert numeric matrix to colors
coverageWindowsCenteredStrandedGet windowed strand-oriented coverages around center points
coverageWindowsCenteredStrandedParallelGet windowed strand-oriented coverages around center point,...
coverageWindowsStrandedGet windowed strand-oriented coverages
coverageWindowsStrandedParallelGet windowed strand-oriented coverages, parallelized
cumPlotCumulative plot with interquartile ranges
meanScaleRow-wise mean scaling
norm.squareRow-wise sum of squares normalization of a matrix
norm.sumRow-wise sum of row normalization of a matrix
ocampoGet ocampo paramters per instance
ocampo2Get ocampo parameters per instance (Tamas version using ccv)
plotProfilesPlot coverages along genome
plotRasterHeatmapPlot Raster Heatmap of matrix
musikutiv/tsTools documentation built on Aug. 1, 2018, 9:42 a.m.