Man pages for musikutiv/tsTools
Toolbox for Functional Genomics Data Processing in R

bam2coverageConvert a bam file to coverage
bed2dyadConvert a bed file to nucleosome dyad coverage
bin.matrixBin a matrix column-wise and average the bins across rows
bin.matrix.rowsBin a matrix column-wise per row
convertToColorsConvert numeric matrix to colors
coverageWindowsCenteredStrandedGet windowed strand-oriented coverages around center points
coverageWindowsStrandedGet windowed strand-oriented coverages
meanScaleRow-wise mean scaling
norm.squareRow-wise sum of squares normalization of a matrix
norm.sumRow-wise sum of row normalization of a matrix
ocampoGet ocampo paramters per instance
plotProfilesPlot coverages along genome
plotRasterHeatmapPlot Raster Heatmap of matrix
musikutiv/tsTools documentation built on Sept. 5, 2017, 1 p.m.