brapi_get_variantsets: get /variantsets

In mverouden/brapir-v2: Client to Access BrAPI Compliant Plant Breeding Databases

get /variantsets

Description

Gets a filtered list of VariantSets.

Usage

brapi_get_variantsets(
  con = NULL,
  variantSetDbId = "",
  variantDbId = "",
  callSetDbId = "",
  studyDbId = "",
  studyName = "",
  page = 0,
  pageSize = 1000
)

Arguments

con	list; required: TRUE; BrAPI connection object
variantSetDbId	character; required: FALSE; The unique database identifier of the VariantSet to be retrieved.
variantDbId	character; required: FALSE; The unique database identifier of the Variant to be retrieved.
callSetDbId	character; required: FALSE; The unique database identifier of the CallSet to be retrieved.
studyDbId	character; required: FALSE; Filter by unique study database identifier.
studyName	character; required: FALSE; Filter by study name.
page	integer; required: FALSE; Used to request a specific page of data to be returned. The page indexing starts at 0 (the first page is page = 0). Default is 0.
pageSize	integer; required: FALSE; The size of the pages to be returned. Default is 1000.

Details

Will return a filtered list of VariantSet.

Value

data.frame

Author(s)

Maikel Verouden

References

BrAPI SwaggerHub

See Also

Other brapi-genotyping: brapi_get_callsets_callSetDbId_calls(), brapi_get_callsets_callSetDbId(), brapi_get_callsets(), brapi_get_calls(), brapi_get_maps_mapDbId_linkagegroups(), brapi_get_maps_mapDbId(), brapi_get_maps(), brapi_get_markerpositions(), brapi_get_references_referenceDbId_bases(), brapi_get_references_referenceDbId(), brapi_get_referencesets_referenceSetDbId(), brapi_get_referencesets(), brapi_get_references(), brapi_get_samples_sampleDbId(), brapi_get_samples(), brapi_get_search_calls_searchResultsDbId(), brapi_get_search_callsets_searchResultsDbId(), brapi_get_search_markerpositions_searchResultsDbId(), brapi_get_search_references_searchResultsDbId(), brapi_get_search_referencesets_searchResultsDbId(), brapi_get_search_samples_searchResultsDbId(), brapi_get_search_variants_searchResultsDbId(), brapi_get_search_variantsets_searchResultsDbId(), brapi_get_variants_variantDbId_calls(), brapi_get_variants_variantDbId(), brapi_get_variantsets_variantSetDbId_callsets(), brapi_get_variantsets_variantSetDbId_calls(), brapi_get_variantsets_variantSetDbId_variants(), brapi_get_variantsets_variantSetDbId(), brapi_get_variants(), brapi_get_vendor_orders_orderId_plates(), brapi_get_vendor_orders_orderId_results(), brapi_get_vendor_orders_orderId_status(), brapi_get_vendor_orders(), brapi_get_vendor_specifications(), brapi_post_samples(), brapi_post_search_callsets(), brapi_post_search_calls(), brapi_post_search_markerpositions(), brapi_post_search_referencesets(), brapi_post_search_references(), brapi_post_search_samples(), brapi_post_search_variantsets(), brapi_post_search_variants(), brapi_post_variantsets_extract(), brapi_put_samples_sampleDbId()

Other Variant Sets: brapi_get_search_variantsets_searchResultsDbId(), brapi_get_variantsets_variantSetDbId_callsets(), brapi_get_variantsets_variantSetDbId_calls(), brapi_get_variantsets_variantSetDbId_variants(), brapi_get_variantsets_variantSetDbId(), brapi_post_search_variantsets(), brapi_post_variantsets_extract()

Examples

## Not run: 
con <- brapi_db()$testserver
brapi_get_variantsets(con = con)

## End(Not run)

mverouden/brapir-v2 documentation built on April 22, 2022, 9:24 a.m.