brapi_post_search_markerpositions: post /search/markerpositions

In mverouden/brapir-v2: Client to Access BrAPI Compliant Plant Breeding Databases

post /search/markerpositions

Description

Submit a search request for MarkerPositions

Usage

brapi_post_search_markerpositions(
  con = NULL,
  linkageGroupNames = "",
  mapDbIds = "",
  minPosition = as.integer(NA),
  maxPosition = as.integer(NA),
  variantDbIds = "",
  page = 0,
  pageSize = 1000
)

Arguments

con	list; required: TRUE; BrAPI connection object
linkageGroupNames	vector of type character; required: FALSE; The uniquely identifiable name(s) of the linkage group(s) to search for; default: "", when using multiple values supply as c(" value1", "value2").
mapDbIds	vector of type character; required: FALSE; The unique database identifier(s) of the map(s) to search for; default: "", when using multiple values supply as c("value1", "value2 ").
minPosition	integer; required: FALSE; The minimum position.
maxPosition	integer; required: FALSE; The maximum position.
variantDbIds	vector of type character; required: FALSE; Unique internal database identifier(s) of the variant(s) to search for; default: "", when using multiple values supply as c("value1", "value2").
page	integer; required: FALSE; Used to request a specific page of data to be returned. The page indexing starts at 0 (the first page is page = 0). Default is 0.
pageSize	integer; required: FALSE; The size of the pages to be returned. Default is 1000.

Details

Submit a search request for MarkerPositions. Function will return either the search results (Status 200 for an immediate response) or a searchResultsDbId (Status 202 for both a saved and an asynchronous search).

Value

data.frame

Author(s)

Maikel Verouden

References

BrAPI SwaggerHub

See Also

Other brapi-genotyping: brapi_get_callsets_callSetDbId_calls(), brapi_get_callsets_callSetDbId(), brapi_get_callsets(), brapi_get_calls(), brapi_get_maps_mapDbId_linkagegroups(), brapi_get_maps_mapDbId(), brapi_get_maps(), brapi_get_markerpositions(), brapi_get_references_referenceDbId_bases(), brapi_get_references_referenceDbId(), brapi_get_referencesets_referenceSetDbId(), brapi_get_referencesets(), brapi_get_references(), brapi_get_samples_sampleDbId(), brapi_get_samples(), brapi_get_search_calls_searchResultsDbId(), brapi_get_search_callsets_searchResultsDbId(), brapi_get_search_markerpositions_searchResultsDbId(), brapi_get_search_references_searchResultsDbId(), brapi_get_search_referencesets_searchResultsDbId(), brapi_get_search_samples_searchResultsDbId(), brapi_get_search_variants_searchResultsDbId(), brapi_get_search_variantsets_searchResultsDbId(), brapi_get_variants_variantDbId_calls(), brapi_get_variants_variantDbId(), brapi_get_variantsets_variantSetDbId_callsets(), brapi_get_variantsets_variantSetDbId_calls(), brapi_get_variantsets_variantSetDbId_variants(), brapi_get_variantsets_variantSetDbId(), brapi_get_variantsets(), brapi_get_variants(), brapi_get_vendor_orders_orderId_plates(), brapi_get_vendor_orders_orderId_results(), brapi_get_vendor_orders_orderId_status(), brapi_get_vendor_orders(), brapi_get_vendor_specifications(), brapi_post_samples(), brapi_post_search_callsets(), brapi_post_search_calls(), brapi_post_search_referencesets(), brapi_post_search_references(), brapi_post_search_samples(), brapi_post_search_variantsets(), brapi_post_search_variants(), brapi_post_variantsets_extract(), brapi_put_samples_sampleDbId()

Other Genome Maps: brapi_get_maps_mapDbId_linkagegroups(), brapi_get_maps_mapDbId(), brapi_get_maps(), brapi_get_markerpositions(), brapi_get_search_markerpositions_searchResultsDbId()

Examples

## Not run: 
con <- brapi_db()$testserver
con[["token"]] <- "YYYY"

# Immediate Response Example
brapi_post_search_markerpositions(con = con,
                                  page = 0,
                                  pageSize = 1000)

# Saved or Asynchronous Search Response Example
brapi_post_search_markerpositions(con = con,
                                  linkageGroupNames = c("Chromosome 1",
                                                        "Chromosome 2"),
                                  mapDbIds = c("genome_map1",
                                               "genome_map2"),
                                  minPosition = 0,
                                  maxPosition = 60000,
                                  variantDbIds = c("variant03",
                                                   "variant06"),
                                  page = 0,
                                  pageSize = 1000)

## End(Not run)

mverouden/brapir-v2 documentation built on April 22, 2022, 9:24 a.m.