read.gaf: Read GAF
In mw201608/msigdb: MSigDB Gene Set Collections
Description
Usage
Arguments
Details
Value
See Also
Examples
Description
This function reads in gene ontology annotations from a GAF file
Usage
1
read.gaf(filename='http://geneontology.org/gene-associations/gene_association.mgi.gz')
Arguments
filename
The name of input file. Should be a (tab-separated text) gene ontology file of GAF format, with one row per GO item per gene.
Details
By default, the argument filename links to the mouse gene ontology data file at geneontology.org. More annotation files can be found from http://geneontology.org/page/download-annotations.
Value
A data.frame with three components:
ID
Accession ID
Symbol
Gene Symbol
GO.ID
GO Term ID
See Also
Examples
1
2
3
4
## Not run:
x = read.gaf()
## End(Not run)
mw201608/msigdb documentation built on Aug. 13, 2021, 10:42 p.m.
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Description Usage Arguments Details Value See Also Examples
Description
This function reads in gene ontology annotations from a GAF file
Usage
1 | read.gaf(filename='http://geneontology.org/gene-associations/gene_association.mgi.gz')
|
Arguments
filename |
The name of input file. Should be a (tab-separated text) gene ontology file of GAF format, with one row per GO item per gene. |
Details
By default, the argument filename links to the mouse gene ontology data file at geneontology.org. More annotation files can be found from http://geneontology.org/page/download-annotations.
Value
A data.frame with three components:
ID |
Accession ID |
Symbol |
Gene Symbol |
GO.ID |
GO Term ID |
See Also
Examples
1 2 3 4 | ## Not run:
x = read.gaf()
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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