read.gmt: Read and write .gmt file
In mw201608/msigdb: MSigDB Gene Set Collections

Read/write gene set collections from/to a .gmt file

1 2	read.gmt(filename) write.gmt(obj, filename)

`filename`	The name of a .gmt file. As input, it should be a tab-separated text file, with one row per gene set. Column 1 has gene set names (identifiers), column 2 has gene set descriptions, remaining columns are gene ids for genes in that gene set.
`obj`	a list. See `Value` explained below.

Function read.gmt returns a list with three components:

`genesets`	List of gene names (identifiers) in each gene set
`geneset.names`	Vector of gene set names (identifiers)
`geneset.descriptions`	Vector of gene set descriptions

## Not run: 
x = read.gmt('c2.cp.v7.4.symbols.gmt')

## End(Not run)

mw201608/msigdb documentation built on Aug. 13, 2021, 10:42 p.m.

mw201608/msigdb index

README.md

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

Description