Global functions | |
---|---|
arbutus | Man page Source code |
arbutus-arbutus | Man page |
arbutus_plot_dist | Man page Source code |
arbutus_plot_point | Man page Source code |
assert.is.unit.tree | Source code |
branching.times.by.depth | Source code |
calculate_pic_stat | Man page Source code |
check.names.phylo | Source code |
check.tree.data | Source code |
check_pic_stat | Man page Source code |
compare_pic_stat | Man page Source code |
default_colours_arbutus | Source code |
default_pic_stat | Man page Source code |
diversitree.to.arbutus.recast | Source code |
diversitree.to.arbutus.se | Source code |
edge.height | Source code |
estimate.sigma2.gls | Source code |
estimate.sigma2.pgls | Source code |
finch | Man page |
get.cache | Source code |
get.children | Source code |
get.likelihood | Source code |
get.ordering | Source code |
get.pgls.pars.unity | Source code |
hist_fill | Source code |
hist_outline | Source code |
hist_xy | Source code |
is.constrained | Source code |
is.unit.tree | Man page Source code |
mahalanobis_arbutus | Man page Source code |
make_model_phylo | Man page Source code |
make_model_phylo.fitC | Source code |
make_model_phylo.fitOU | Source code |
make_unit_tree | Man page Source code |
make_unit_tree.default | Source code |
make_unit_tree.mcmcsamples | Source code |
make_unit_tree.mcmcsamples.pgls | Source code |
make_unit_tree.multiPhylo | Source code |
make_unit_tree.phylo | Source code |
ml.to.reml | Source code |
model_data | Source code |
model_data.OUwie | Source code |
model_data.fit.mle | Source code |
model_data.fit.mle.pgls | Source code |
model_data.gfit | Source code |
model_data.gls | Source code |
model_data.mcmcsamples | Source code |
model_data.mcmcsamples.pgls | Source code |
model_data.pgls | Source code |
model_data.phylolm | Source code |
model_info | Man page Source code |
model_info.OUwie | Source code |
model_info.fit.mle | Source code |
model_info.gfit | Source code |
model_info.gls | Source code |
model_info.mcmcsamples | Source code |
model_info.pgls | Source code |
model_info.phylolm | Source code |
model_pars | Source code |
model_pars.OUwie | Source code |
model_pars.corStruct | Source code |
model_pars.fit.mle | Source code |
model_pars.fit.mle.pgls | Source code |
model_pars.gfit | Source code |
model_pars.gls | Source code |
model_pars.mcmcsamples | Source code |
model_pars.mcmcsamples.pgls | Source code |
model_pars.pgls | Source code |
model_pars.phylolm | Source code |
model_phylo_bm | Source code |
model_phylo_bms | Source code |
model_phylo_delta | Source code |
model_phylo_eb | Source code |
model_phylo_kappa | Source code |
model_phylo_lambda | Source code |
model_phylo_ou | Source code |
model_phylo_ouse | Source code |
model_phylo_rescale | Source code |
model_phylo_se | Source code |
model_phylo_trend | Source code |
model_phylo_white | Source code |
model_type | Source code |
model_type.OUwie | Source code |
model_type.fit.mle | Source code |
model_type.fit.mle.pgls | Source code |
model_type.gfit | Source code |
model_type.gls | Source code |
model_type.mcmcsamples | Source code |
model_type.mcmcsamples.pgls | Source code |
model_type.pgls | Source code |
model_type.phylolm | Source code |
parnames.bm | Source code |
parnames.bms | Source code |
parnames.delta | Source code |
parnames.eb | Source code |
parnames.kappa | Source code |
parnames.lambda | Source code |
parnames.ou | Source code |
parnames.white | Source code |
parnmaes.trend | Source code |
pic_stat_cvar | Man page Source code |
pic_stat_cvar_plot | Man page Source code |
pic_stat_dcdf | Man page Source code |
pic_stat_dcdf_plot | Man page Source code |
pic_stat_msig | Man page Source code |
pic_stat_msig_plot | Man page Source code |
pic_stat_sasr | Man page Source code |
pic_stat_sasr_plot | Man page Source code |
pic_stat_shgt | Man page Source code |
pic_stat_shgt_plot | Man page Source code |
pic_stat_svar | Man page Source code |
pic_stat_svar_plot | Man page Source code |
plot.arbutus | Man page Source code |
print.arbutus | Man page Source code |
prune.phylo | Source code |
pvalue_arbutus | Man page Source code |
reml.to.ml | Source code |
sim.char.std.bm | Source code |
simulate_char_unit | Man page Source code |
translate.ape.arbutus | Source code |
tree.depth | Source code |
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