saga_gentargets: Create SAGA samples target file.
In mytalbot/saga_package: Surrogate Assay for Genotoxicity Assessment Package for Array Transformation Predictions
Description
Usage
Arguments
Details
Value
View source: R/saga_gentargets.R
Description
saga_gentargets will automatically create a "SampleInformation.txt" file (SIF) if none is provided. If you chose to use this function, a folder
with sample *.txt files is needed. Each textfile must contain the full Agilent microarray information.
Usage
1
saga_gentargets(smplpath)
Arguments
smplpath
path to the saga data folder with the user samples.
Details
PLEASE NOTE: When the targets file is generated it cannot know about your sample batches. Batch defaults to No. for each sample is 1. You
can use any other number to indicate your batches BUT you'll have to change the numbers manually (i.e, in Excel or in a text editor). Since saga cannot
know about these information, <ou will also have to adjust the Group, Vector and TrueLabel fields manually.
Value
targets default target file for user samples.
mytalbot/saga_package documentation built on Feb. 26, 2021, 3:41 a.m.
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Description Usage Arguments Details Value
View source: R/saga_gentargets.R
Description
saga_gentargets will automatically create a "SampleInformation.txt" file (SIF) if none is provided. If you chose to use this function, a folder
with sample *.txt files is needed. Each textfile must contain the full Agilent microarray information.
Usage
1 | saga_gentargets(smplpath)
|
Arguments
smplpath |
path to the saga data folder with the user samples. |
Details
PLEASE NOTE: When the targets file is generated it cannot know about your sample batches. Batch defaults to No. for each sample is 1. You
can use any other number to indicate your batches BUT you'll have to change the numbers manually (i.e, in Excel or in a text editor). Since saga cannot
know about these information, <ou will also have to adjust the Group, Vector and TrueLabel fields manually.
Value
targets default target file for user samples.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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