saga_norm: Normalize joint SAGA data sets
In mytalbot/saga_package: Surrogate Assay for Genotoxicity Assessment Package for Array Transformation Predictions
Description
Usage
Arguments
Value
Description
saga_norm uses both, user data and SAGA data to perform quantile normalization. Multiple probes within arrays are averaged.
Usage
1
saga_norm(SAGA_RAW, TEST_RAW, pData.joint, plotnumber = 2)
Arguments
SAGA_RAW
SAGA raw data matrix
TEST_RAW
Test or sample data in SAGA matrix format
pData.joint
joint data matrix (internal SAGA data + sample data)
plotnumber
default=2 for t-SNE of SAGA model data + sample; alternative = 1 for quantile normalized boxplot with samples
Value
eset.rma expression set of normalized array data.
mytalbot/saga_package documentation built on Feb. 26, 2021, 3:41 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
saga_norm uses both, user data and SAGA data to perform quantile normalization. Multiple probes within arrays are averaged.
Usage
1 | saga_norm(SAGA_RAW, TEST_RAW, pData.joint, plotnumber = 2)
|
Arguments
SAGA_RAW |
SAGA raw data matrix |
TEST_RAW |
Test or sample data in SAGA matrix format |
pData.joint |
joint data matrix (internal SAGA data + sample data) |
plotnumber |
default=2 for t-SNE of SAGA model data + sample; alternative = 1 for quantile normalized boxplot with samples |
Value
eset.rma expression set of normalized array data.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.