saga_wrapper: SAGA Wrapper
In mytalbot/saga_package: Surrogate Assay for Genotoxicity Assessment Package for Array Transformation Predictions
Description
Usage
Arguments
Details
Value
Description
The saga_wrapper function integrates all SAGA functions into one. With this function you are not as flexible as
with the single ones but you can run the analysis/ classification in one step.
However, this requires a complete SampleInformatin.txt file. For GSEA analysis the SampleInformation file must also fulfill
the neccessary criteria. See saga_vignette for more information.
Usage
1
saga_wrapper(smplpath, showModel = 1, doGSEA = 0)
Arguments
smplpath
sample path
showModel
Can be 0 or 1. If set to 1 (default) PCA plot (+samples) will be shown.
doGSEA
Can be 0 or 1. If set to 1, GSEA analysis will be added to the analysis.
Details
saga_wrapper
Value
output optimized SVM model for classification.
mytalbot/saga_package documentation built on Feb. 26, 2021, 3:41 a.m.
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Description Usage Arguments Details Value
Description
The saga_wrapper function integrates all SAGA functions into one. With this function you are not as flexible as
with the single ones but you can run the analysis/ classification in one step.
However, this requires a complete SampleInformatin.txt file. For GSEA analysis the SampleInformation file must also fulfill
the neccessary criteria. See saga_vignette for more information.
Usage
1 | saga_wrapper(smplpath, showModel = 1, doGSEA = 0)
|
Arguments
smplpath |
sample path |
showModel |
Can be 0 or 1. If set to 1 (default) PCA plot (+samples) will be shown. |
doGSEA |
Can be 0 or 1. If set to 1, GSEA analysis will be added to the analysis. |
Details
saga_wrapper
Value
output optimized SVM model for classification.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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