Files in n-mounier/bGWAS
Bayesian Genome-Wide Association Study
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/bGWAS.R
R/bGWAS_PriorGWASs.R
R/bGWAS_classFunctions.R
R/compute_Prior.R
R/data.R
R/get_SignificantSNPs.R
R/identify_StudiesMR.R
R/makeFull_ZMatrix.R
R/makeMR_ZMatrix.R
R/prune_byDistance.R
R/request_BFandP.R
R/tidy_inputGWAS.R
README.Rmd
README.md
data/SmallGWAS_Timmers2019.rda
doc/Figures/Lifespan_v1.0.0-results1-1.png
doc/Figures/Lifespan_v1.0.0-results3-1.png
doc/Figures/Lifespan_v1.0.0-results4-1.png
doc/Figures/Lifespan_v1.0.2-compare-BF-1.png
doc/Figures/Lifespan_v1.0.2-compare-p-1.png
doc/Figures/Lifespan_v1.0.2-compare-prior-1.png
doc/Figures/Lifespan_v1.0.2-results1-1.png
doc/Figures/Lifespan_v1.0.2-results3-1.png
doc/Figures/Lifespan_v1.0.2-results4-1.png
doc/Figures/Lifespan_v1.0.2-results_Direct-1.png
doc/Figures/Lifespan_v1.0.2-results_Heatmap-1.png
doc/Figures/Lifespan_v1.0.2-results_ManhattanPlots-1.png
doc/Figures/Lifespan_v1.0.2-results_ManhattanPlotsPosterior-1.png
doc/Figures/Lifespan_v1.0.2-results_PriorGWASs-1.png
doc/Figures/README-PlotsA-1.png
doc/Figures/README-PlotsA-2.png
doc/Figures/README-PlotsA-3.png
doc/Lifespan_Analysis.Rmd
doc/Lifespan_Analysis.md
doc/OutputFiles.md
doc/P17.051.A_NinonMounier.pdf
doc/ZMatrices.md
doc/bGWAS-manual.pdf
inst/Data/A.RDS
inst/Data/Z_Matrices/AvailableStudies.tsv
inst/Data/Z_Matrices/ZMatrix_Full.csv.gz
inst/Data/Z_Matrices/ZMatrix_MR.csv.gz
inst/Figures/BFs.jpg
inst/Figures/PriorEstimation.jpg
inst/Figures/logo.png
inst/Scripts/Get_GenesAndTraits.R
inst/Scripts/Make_Data.R
inst/Scripts/Make_ZMatrices.R
man/SmallGWAS_Timmers2019.Rd
man/all.equal.bGWAS.Rd
man/bGWAS.Rd
man/coefficients_plot_bGWAS.Rd
man/extract_MRcoeffs_bGWAS.Rd
man/extract_results_bGWAS.Rd
man/get_RSquared_bGWAS.Rd
man/heatmap_bGWAS.Rd
man/list_files.Rd
man/list_priorGWASs.Rd
man/list_traits.Rd
man/manhattan_plot_bGWAS.Rd
man/print.bGWAS.Rd
man/print_log_bGWAS.Rd
man/select_priorGWASs.Rd
tests/Test_Install.md
tests/testthat/bGWAS_params_test.R
tests/testthat/test_bGWAS_params.R
