Description Usage Arguments Details Value
The BAL and sputum data are poorly recorded/structured and so create separate smear and culture BAL fields in to 4 fields.
1 |
data |
Searches on keywords e.g. "BAL" or "BRONCHIAL WASH" in TypeSmear, Bodysite_smear, Othertest1Name, Othertest2Name
,
and TBcultsite, Bodysite_culture, Othertest1Name, Othertest2Name
.
We assume that if there was a BAL then there was also a previous negative sputum sample, (ignore the possibility if they couldn't take a sputum sample) and if there was a BAL there this was for both smear and culture.
data
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