Files in n8thangreen/IDEAdectree
Compares IDEA study clinical data with decision tree idealised pathway

.Rbuildignore
.Rprofile.txt
.gitignore
DESCRIPTION
IDEAdectree.Rprofile
NAMESPACE
R/CEAC-CEplane.R R/CEAC.R R/DecisionTreeIDEA-fn.R R/EXPI.R
R/README.txt
R/allgrids.R R/calcPatientCostofTests.R R/clean-data-fns.R R/cleanData.R R/cost-of-tests-fns.R R/createOutcomeTable.R R/createTimeToDiagnosisTable.R R/crosstabDosanjh.R R/data-COSTdistns.R R/data-TBdata_clinical_cleaned.R R/decisionTree_plot.R R/enhanceddiagcost_table.R R/estimateTimeToDiagnosis.R R/idealised-pathway-cost.R R/idealised-pathway-time-to-diag.R R/indiv-dectree-sampling.R R/makeFollowupPlots.R R/make_ruleoutTable-bysubgroups.R R/make_ruleoutTable-fixed.R R/make_ruleoutTable-pre.R R/my-bcea-plotting-fns.R R/plot-followup-fn.R R/plotROCdectree.R R/plot_riskprofile.R R/prepDataForDecTree.R R/pwayComparison.R R/readFromDatabaseExtract.R R/rpert.R R/sensspec_env.R R/summaryTable.R R/surface-plotting.R
R/sysdata.rda
R/tidyBALdata.R README.Rmd README.md
data-raw/IDEA_clinical.RData
data/COSTdistns.RData
data/COSTdistns_allerror.RData
data/TBdata_clinical_cleaned.RData
data/allgrids.RData
data/drug_dose-cost.RData
data/postcode_LA_lookup.RData
data/senspec_env.RData
docs/25quantiles-basecase-QFN-TSPOT.Rmd
docs/25quantiles-basecase-QFN-TSPOT.docx
docs/25quantiles-basecase-QFN-TSPOT.md
docs/290416-APPENDIX-all_outputs_together.docx
docs/65quantiles-basecase-QFN-TSPOT.Rmd
docs/65quantiles-basecase-QFN-TSPOT.docx
docs/65quantiles-basecase-QFN-TSPOT.md docs/APPENDIX-all_outputs_together.Rmd
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docs/APPENDIX-all_outputs_together.md
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docs/myfilenames.txt
inst/extdata/EBUS-patientIDs.csv
inst/extdata/IDEA_clinical_new.accdb
inst/extdata/README.txt
inst/extdata/TBdata_clinical_cleaned.csv
inst/extdata/extractNames.csv
inst/extdata/patientdata_new_Patients_table-Mar.csv
inst/extdata/patientdata_new_Patients_table.csv
inst/extdata/patientdata_orig.xlsx
man/COST.distns.Rd man/EstimateSymptomsResolved.Rd man/GroupDiagOutcomes.Rd man/IDEAdectree.simple.Rd man/INMB.Rd man/MoM.beta.Rd man/MoM.gamma.Rd man/addLevel_Nottaken.Rd man/addMissingEntries.Rd man/as.Date.POSIX.Rd man/assert.dateinpast.Rd man/boot.calcIdealisedTestCosts.Rd man/boot.testPerformanceMetricTable.Rd man/bootstrap.data.Rd man/calc.EVPI.Rd man/calc.enhancedDiagTimeAndCost.bootsample.Rd man/calc.statOutcomeByCovariate.Rd man/calc.summarystats_Dosanjh_TimeCost.Rd man/calc.testDate.min.Rd man/calcExpectedINMB.Rd man/calcIdealisedTestCosts.Rd man/calcIdealisedTimetoDiag.Rd man/calcPatientCostofTests.Rd man/calcRiskFactorScore.Rd man/calcSumRow.Rd man/cleanData.Rd man/combineTestResults.Rd man/create.indivpathmatrix.Rd man/createCombinedGrid.Rd man/createDTobj.Rd man/createDecisionTree.Rd man/crosstabDosanjh.Rd man/data.Rd man/decisionTree.plot.Rd man/decisionTreeMultiple.plot.Rd man/diag_Sxest.Rd man/diag_Sxobs.Rd man/estimateTimeToDiagnosis.Rd man/fillInEndOfTreatmentDate.Rd man/freqTable.DecisionTree.Rd man/get.allDataTestCombinations.Rd man/get.meansdOutcomeByCovariate.Rd man/get.meansdStartToDiagByCovariate.Rd man/get.sd.from.normalCI.Rd man/get.statStartToDiagByCovariate.Rd man/get.uniqueDataTestCombinations.Rd man/getDateFrequencies.Rd man/is.diagByClinicalFeatures.Rd man/is.empty.Rd man/join.stratifiedOutcomeTables.Rd man/joinDataAndRules.Rd man/joinLevels.Rd man/joinWithLookups.Rd man/make.ruleoutTable.FNtime.Rd man/make.ruleoutTable.bootsample.Rd man/make.ruleoutTable.cat4percent.Rd man/make.ruleoutTable.fixed.Rd man/make.ruleoutTable.highrisk.Rd man/make.ruleoutTable.pre.Rd man/make.tableDiagCost_bootmeanse.Rd man/make.testFreqTable.Rd man/make.testPerformanceMetricsTable.Rd man/makeExpectedINMBtable.Rd man/makeFollowupPlots.Rd man/maketable.CEAC_estimates.Rd man/my.plot.bcea.Rd man/my.plot.ceac.Rd man/plot.EVPI.Rd man/plot.FollowUpChart.Rd man/plot.riskprofile.Rd man/plotCEAC.xSens.groupSpecCost.Rd man/plotCEplane.Rd man/prepDataForDecTree.Rd man/pwayComparison.Rd man/pwayComparison.simple.Rd man/readFromDatabaseExtract.Rd man/relabelDecTreeOutcomes.Rd man/rm.TooEarly.Rd man/rmPatientsInCleaning.Rd man/rpert.Rd man/sample.distributions.Rd man/senspec.env.Rd man/summaryTable.Rd man/tests.Rd man/testsdummy.allIdeaTests.Rd man/testsdummy.allPossTests.Rd man/testsdummy.preCultTreatAll.Rd man/tidyBALSputumdata.Rd man/tidyCSFdata.Rd man/tidyCTdata.Rd man/tidyCXRdata.Rd man/writeAllFreqTables.Rd
raw-data/IDEA_clinical.RData
tests/QALYs.R tests/testthat.R tests/testthat/tester.R
n8thangreen/IDEAdectree documentation built on May 23, 2017, 9:32 a.m.