## ----save in vignette folder---------------------------------------------
# devtools::document(roclets = "vignette")
## ----set-options, echo=FALSE, cache=FALSE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
options(width = 1000)
## ----setup, echo=FALSE, results="hide"------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
# define YAML and R code chunk header and footer
lang_output <- function(x, lang) {
cat(c(sprintf("```%s", lang), x, "```"), sep="\n")
}
r_output <- function(x) lang_output(x, "r")
yaml_output <- function(x) lang_output(x, "yaml")
knitr::opts_chunk$set(
fig.width=7,
fig.height=5)
## ----load packages, echo=FALSE, warning=FALSE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
library(yaml)
library(data.tree)
library(magrittr)
library(rprojroot)
devtools::load_all(".", quiet = TRUE)
## ----load_yaml------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
path_dtree <- system.file("raw data/LTBI_dtree-cost_SIMPLE.yaml", package = "treeSimR")
osList <- yaml.load_file(path_dtree)
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