GSE114922.psi: Example dataset containing PSI values

In nachoryu/ASpediaFI: ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events

Example dataset containing PSI values

Description

A SummarizedExperiment containing PSI values of 5,000 AS events. We downloaded RNA-Seq reads of 82 MDS patients from GEO database (GSE114922), aligned with STAR, and computed PSI values using rMATS. AS events with a lot of missing values or extreme values, or those on genes with low expression were filtered out and 5,000 most variable AS events were selected.

Usage

GSE114922.psi

Format

An object of class SummarizedExperiment with 10000 rows and 40 columns.

References

Pellagatti, A. et al. (2018). Impact of spliceosome mutations on RNA splicing in myelodysplasia: dysregulated genes/pathways and clinical associations. Blood, 132.

Examples

data(GSE114922.psi)

nachoryu/ASpediaFI documentation built on Aug. 19, 2022, 7:51 a.m.