GSE114922.psi: Example dataset containing PSI values

Description Usage Format References Examples

Description

A SummarizedExperiment containing PSI values of 5,000 AS events. We downloaded RNA-Seq reads of 82 MDS patients from GEO database (GSE114922), aligned with STAR, and computed PSI values using rMATS. AS events with a lot of missing values or extreme values, or those on genes with low expression were filtered out and 5,000 most variable AS events were selected.

Usage

1

Format

An object of class SummarizedExperiment with 10000 rows and 40 columns.

References

Pellagatti, A. et al. (2018). Impact of spliceosome mutations on RNA splicing in myelodysplasia: dysregulated genes/pathways and clinical associations. Blood, 132.

Examples

1

nachoryu/ASpediaFI documentation built on April 6, 2020, 10:49 a.m.