Files in nachoryu/ASpediaFI
ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/ASpediaFI-class.R
R/AllGenerics.R
R/SplicingReads.R
R/accessors.R
R/analyze.R
R/analyzeFI.R
R/annotate.R
R/annotateASevents.R
R/createAnnotationTrack_event.R
R/createAnnotationTrack_transcripts.R
R/createExonTable.R
R/createTxnTrack.R
R/data.R
R/detect.R
R/detectALSS.R
R/detectEventFromTxDb.R
R/detectRI.R
R/detectSEandMXE.R
R/drawr.R
R/exportNetwork.R
R/filterEvent.R
R/makeGRangesListFromEvent.R
R/mapTranscriptsA3SSevent.R
R/mapTranscriptsA5SSevent.R
R/mapTranscriptsMXEevent.R
R/mapTranscriptsRIevent.R
R/mapTranscriptsSEevent.R
R/quantify.R
R/quantifyPSI.R
R/sysdata.rda
R/visualize.R
R/visualizeEvent.R
R/visualizeNetwork.R
README.md
data/GSE114922.fpkm.rda
data/GSE114922.psi.rda
inst/extdata/GRCh38.subset.gtf
inst/extdata/GSM3167290.subset.bam
inst/extdata/GSM3167290.subset.bam.bai
inst/script/README
man/ASpediaFI-accessor.Rd
man/ASpediaFI-class.Rd
man/GSE114922.fpkm.Rd
man/GSE114922.psi.Rd
man/analyzeFI.Rd
man/annotateASevents.Rd
man/exportNetwork.Rd
man/quantifyPSI.Rd
man/visualize.Rd
vignettes/ASpediaFI.rnw
vignettes/Figure1.png
