small_covariates: Covariates for poplar samples in stem regeneration experiment

In naglemi/mtmcskat: Multi-Threaded Monte Carlo Sequence Kernel Association Test (MTMC-SKAT)

Covariates for poplar samples in stem regeneration experiment

Description

A dataset containing covariates including stem diameter, phase and principal components (PCs), for a small subset of 200 genotypes out of the poplar GWAS population

Usage

small_covariates

Format

A data frame with 200 rows and 11 variables

Stem_diameter

Numeric value (double) representing the diameter of the stem of a poplar sample, in mm

Phase1

Indicator variable, with 1 if the sample was studied in Phase 1

Phase2

Indicator variable, with 1 if the sample was studied in Phase 2

Phase3

Indicator variable, with 1 if the sample was studied in Phase 3

Phase4

Indicator variable, with 1 if the sample was studied in Phase 4

Phase5

Indicator variable, with 1 if the sample was studied in Phase 5

Phase6

Indicator variable, with 1 if the sample was studied in Phase 6

Phase7

Indicator variable, with 1 if the sample was studied in Phase 7

PC1

Loadings for the first principal component derived from SNPs using the 'pca' method in PLINK

PC2

Loadings for the second principal component derived from SNPs using the 'pca' method in PLINK

PC3

Loadings for the third principal component derived from SNPs using the 'pca' method in PLINK

naglemi/mtmcskat documentation built on Aug. 23, 2023, 5:35 p.m.