small_mtskat_results: MTSKAT results from multithreading over SNP windows

In naglemi/mtmcskat: Multi-Threaded Monte Carlo Sequence Kernel Association Test (MTMC-SKAT)

MTSKAT results from multithreading over SNP windows

Description

Results obtained from running MTSKAT with multithreading over SNP windows in sample_re_allocated_SNP_windows, using the function mtskat

Usage

small_mtskat_results

Format

A data frame with 29 rows and 4 variables

Chr

Integer or character value indicating the chromosome or scaffold on which a given SNP is found

position

Integer providing the position of a given SNP, in base pairs

SKAT_p-val

Numeric value (double) providing the p-value obtained by SKAT without resampling

SKAT_p-val_resampled

Column containing NA, to be replaced with empirical p-values when this data structure is provided to mtmcskat_NullModels or mtmcskat_SNPs

naglemi/mtmcskat documentation built on Aug. 23, 2023, 5:35 p.m.